[Vv] Problems installing CLITK via vv superbuild file
Vivien Delmon
vivien.delmon at creatis.insa-lyon.fr
Thu Feb 28 13:45:16 CET 2013
On 02/27/2013 07:27 PM, Bilal Tahir wrote:
> Thanks for uploading but I now get the following message:
>
>
> Inline images 1
>
>
> Any ideas?
You can try this new version
http://www.creatis.insa-lyon.fr/~delmon/vv_nightly/vv-20130228.sh
compiled with an older version of gcc (older enough I hope)
Thank you for the feedback, I hope this version is the good one :)
> All the best,
>
> BIlal
>
> On 27 February 2013 15:28, Vivien Delmon
> <vivien.delmon at creatis.insa-lyon.fr
> <mailto:vivien.delmon at creatis.insa-lyon.fr>> wrote:
>
> On 02/27/2013 03:22 PM, Bilal Tahir wrote:
>
> Dear Vivien,
>
> I deleted the previous version of vv and after installing and
> adding the
> path, I got the following error:
>
>
> Inline images 1
>
>
> libstatgrab is an optional dependency of VV. Since it is installed
> on my computer the nightly build use it.
> I just added an option to deactivate this optional dependency and
> updated the nightly build, you can download it again.
>
> Thank you for testing vv's nightly build and sorry for the
> inconveniences.
>
> Please note that vv was working fine before and it didn't give this
> error. Do you know how to solve it?
>
> Best wishes,
>
> Bilal
>
> On 27 February 2013 13:51, Vivien Delmon
> <vivien.delmon at creatis.insa-__lyon.fr
> <mailto:vivien.delmon at creatis.insa-lyon.fr>
> <mailto:vivien.delmon at creatis.__insa-lyon.fr
> <mailto:vivien.delmon at creatis.insa-lyon.fr>>> wrote:
>
> On 02/24/2013 12:09 PM, Simon Rit wrote:
>
> Dear Bilal,
> We are considering this for VV first but we will not
> support
> this for
> clitk tools. We are happy to provide clitk tools but
> users must
> try to
> solve their compilation issues.
>
>
> I just compiled the first vv nightly build (linux 64 bits)
> which is
> available here :
> http://www.creatis.insa-lyon.____fr/~delmon/vv_nightly/vv-____20130227.sh
> <http://www.creatis.insa-lyon.__fr/~delmon/vv_nightly/vv-__20130227.sh
> <http://www.creatis.insa-lyon.fr/~delmon/vv_nightly/vv-20130227.sh>>
>
>
> By the way, compilation of clitk tools, if this is what
> you are
> interested in, should not require qt if you disable VV
> compilation
> (CLITK_BUILD_VV:BOOL=OFF).
> Simon
>
> On Sat, Feb 23, 2013 at 12:13 AM, Bilal Tahir
> <b.tahir at sheffield.ac.uk
> <mailto:b.tahir at sheffield.ac.uk>
> <mailto:b.tahir at sheffield.ac.__uk <mailto:b.tahir at sheffield.ac.uk>>
> <mailto:b.tahir at sheffield.ac.
> <mailto:b.tahir at sheffield.ac.>____uk
>
> <mailto:b.tahir at sheffield.ac.__uk
> <mailto:b.tahir at sheffield.ac.uk>>>> wrote:
>
> Can I make a request that the latest version of VV
> including CLITK
> with all options set to ON be made available as a
> precompiled .sh
> binary file? Slicer3D http://download.slicer.org/
> allows for a
> nightly download of the binary version of the
> latest version.
>
> This is due to my case where I have experienced
> many errors in
> trying to install the relevant programs until I
> finally get to
> install CLITK whereas the Oct 2012 precomiled
> binary .sh
> file worked
> fine on linux for me. However, CLITK was not
> included in
> that release.
>
> Best wishes,
>
> Bilal
>
> On 22 February 2013 22:58, Bilal Tahir
> <b.tahir at sheffield.ac.uk
> <mailto:b.tahir at sheffield.ac.uk>
> <mailto:b.tahir at sheffield.ac.__uk <mailto:b.tahir at sheffield.ac.uk>>
> <mailto:b.tahir at sheffield.ac.
> <mailto:b.tahir at sheffield.ac.>____uk
>
> <mailto:b.tahir at sheffield.ac.__uk
> <mailto:b.tahir at sheffield.ac.uk>>>> wrote:
>
> Dear All,
>
> I am trying to install CLITK by adding the
> relevant =ON
> options
> on the CMakeLists.txt file (attached edited
> version in this
> email) found in the following link
> https://git.creatis.insa-lyon.____fr/pubgit/?p=clitk.git;a=__blob;__f=superbuild/__CMakeLists.txt
>
>
> <https://git.creatis.insa-__lyon.fr/pubgit/?p=clitk.git;a=__blob;f=superbuild/CMakeLists.__txt
> <https://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=blob;f=superbuild/CMakeLists.txt>>
>
> I then run the following two commands:
>
>
> cmake superbuild-file-directory
> make
>
> However, after running 'make' it started
> installing the
> programs
> (ITK, QT and VTK) one after the other for
> several hours
> until it
> reached 60% of the last program 'VV' where it
> gave the
> following
> errors and stopped:
>
> collect2: ld returned 1 exit status
> make[5]: *** [bin/vv] Error 1
> make[4]: *** [vv/CMakeFiles/vv.dir/all] Error 2
> make[3]: *** [all] Error 2
> make[2]: *** [Stamp/VV/VV-build] Error 2
> make[1]: *** [CMakeFiles/VV.dir/all] Error 2
> make: *** [all] Error 2
>
> I've copied and posted some of the last few
> lines up
> till the
> point that the error came.
>
> The 'make' command created several folders in
> my home
> folder
> (/home/md1bat/) including 'Source' and 'Build'. It
> appears that
> ITK, QT and VTK (not VV) completed as you can
> see from
> the /home/md1bat/CMakeFiles/ folder.
>
> Inline images 1
>
> Within the 'Build' folder, each of the four
> programs,
> ITK, VTK,
> QT and VV have at least a bin and/or lib
> folder. This
> is not the
> case in the 'Source' folder. Therefore, I have
> added
> the paths
> of the respective bin and lib folders from the
> 'Build'
> folder
> (not Source) to my .bashrc file (attached in
> this email).
> However, none of the programs (including the
> completed
> ITK, QT
> and VTK) seem to work even if I want to check
> which
> version I
> have installed using the command e.g itk
> --version. I
> have now
> deleted the precompiled 'VV' Oct 2012 version
> which
> used to work
> with the command vv. However, the command vv
> now gives the
> output 'command not found'.
>
> I'm not sure if I have done the export path
> correctly on my
> .bashrc as I have referenced it to the 'Build'
> folder
> and not
> the 'Source' folder as there was no bin or lib
> folders
> within
> that. Furthermore, I have no idea why the
> errors occurred.
>
> Please let me know if you have any suggestions.
>
> Best wishes,
>
> Bilal Tahir,
> James Morrison Researcher in Radiotherapy Imaging,
> University of Sheffield/Weston Park Cancer
> Hospital
--
Vivien Delmon
PhD student at CREATIS, Lyon
Supported by ANRT and ELEKTA
http://www.creatis.insa-lyon.fr/rio
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