[Vv] Problems installing CLITK via vv superbuild file
Bilal Tahir
b.tahir at sheffield.ac.uk
Wed Feb 27 19:27:10 CET 2013
Thanks for uploading but I now get the following message:
[image: Inline images 1]
Any ideas?
All the best,
BIlal
On 27 February 2013 15:28, Vivien Delmon <vivien.delmon at creatis.insa-lyon.fr
> wrote:
> On 02/27/2013 03:22 PM, Bilal Tahir wrote:
>
>> Dear Vivien,
>>
>> I deleted the previous version of vv and after installing and adding the
>> path, I got the following error:
>>
>>
>> Inline images 1
>>
>>
> libstatgrab is an optional dependency of VV. Since it is installed on my
> computer the nightly build use it.
> I just added an option to deactivate this optional dependency and updated
> the nightly build, you can download it again.
>
> Thank you for testing vv's nightly build and sorry for the inconveniences.
>
> Please note that vv was working fine before and it didn't give this
>> error. Do you know how to solve it?
>>
>> Best wishes,
>>
>> Bilal
>>
>> On 27 February 2013 13:51, Vivien Delmon
>> <vivien.delmon at creatis.insa-**lyon.fr<vivien.delmon at creatis.insa-lyon.fr>
>> <mailto:vivien.delmon at creatis.**insa-lyon.fr<vivien.delmon at creatis.insa-lyon.fr>>>
>> wrote:
>>
>> On 02/24/2013 12:09 PM, Simon Rit wrote:
>>
>> Dear Bilal,
>> We are considering this for VV first but we will not support
>> this for
>> clitk tools. We are happy to provide clitk tools but users must
>> try to
>> solve their compilation issues.
>>
>>
>> I just compiled the first vv nightly build (linux 64 bits) which is
>> available here :
>> http://www.creatis.insa-lyon._**_fr/~delmon/vv_nightly/vv-__**20130227.sh
>> <http://www.creatis.insa-lyon.**fr/~delmon/vv_nightly/vv-**20130227.sh<http://www.creatis.insa-lyon.fr/~delmon/vv_nightly/vv-20130227.sh>
>> >
>>
>>
>> By the way, compilation of clitk tools, if this is what you are
>> interested in, should not require qt if you disable VV compilation
>> (CLITK_BUILD_VV:BOOL=OFF).
>> Simon
>>
>> On Sat, Feb 23, 2013 at 12:13 AM, Bilal Tahir
>> <b.tahir at sheffield.ac.uk <mailto:b.tahir at sheffield.ac.**uk<b.tahir at sheffield.ac.uk>
>> >
>> <mailto:b.tahir at sheffield.ac._**_uk
>>
>> <mailto:b.tahir at sheffield.ac.**uk <b.tahir at sheffield.ac.uk>>>>
>> wrote:
>>
>> Can I make a request that the latest version of VV
>> including CLITK
>> with all options set to ON be made available as a
>> precompiled .sh
>> binary file? Slicer3D http://download.slicer.org/ allows
>> for a
>> nightly download of the binary version of the latest version.
>>
>> This is due to my case where I have experienced many errors
>> in
>> trying to install the relevant programs until I finally get
>> to
>> install CLITK whereas the Oct 2012 precomiled binary .sh
>> file worked
>> fine on linux for me. However, CLITK was not included in
>> that release.
>>
>> Best wishes,
>>
>> Bilal
>>
>> On 22 February 2013 22:58, Bilal Tahir
>> <b.tahir at sheffield.ac.uk <mailto:b.tahir at sheffield.ac.**uk<b.tahir at sheffield.ac.uk>
>> >
>> <mailto:b.tahir at sheffield.ac._**_uk
>>
>> <mailto:b.tahir at sheffield.ac.**uk <b.tahir at sheffield.ac.uk>>>>
>> wrote:
>>
>> Dear All,
>>
>> I am trying to install CLITK by adding the relevant =ON
>> options
>> on the CMakeLists.txt file (attached edited version in
>> this
>> email) found in the following link
>> https://git.creatis.insa-lyon.**__fr/pubgit/?p=clitk.git;a=**
>> blob;__f=superbuild/**CMakeLists.txt
>>
>> <https://git.creatis.insa-**lyon.fr/pubgit/?p=clitk.git;a=**
>> blob;f=superbuild/CMakeLists.**txt<https://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=blob;f=superbuild/CMakeLists.txt>
>> >
>>
>> I then run the following two commands:
>>
>>
>> cmake superbuild-file-directory
>> make
>>
>> However, after running 'make' it started installing the
>> programs
>> (ITK, QT and VTK) one after the other for several hours
>> until it
>> reached 60% of the last program 'VV' where it gave the
>> following
>> errors and stopped:
>>
>> collect2: ld returned 1 exit status
>> make[5]: *** [bin/vv] Error 1
>> make[4]: *** [vv/CMakeFiles/vv.dir/all] Error 2
>> make[3]: *** [all] Error 2
>> make[2]: *** [Stamp/VV/VV-build] Error 2
>> make[1]: *** [CMakeFiles/VV.dir/all] Error 2
>> make: *** [all] Error 2
>>
>> I've copied and posted some of the last few lines up
>> till the
>> point that the error came.
>>
>> The 'make' command created several folders in my home
>> folder
>> (/home/md1bat/) including 'Source' and 'Build'. It
>> appears that
>> ITK, QT and VTK (not VV) completed as you can see from
>> the /home/md1bat/CMakeFiles/ folder.
>>
>> Inline images 1
>>
>> Within the 'Build' folder, each of the four programs,
>> ITK, VTK,
>> QT and VV have at least a bin and/or lib folder. This
>> is not the
>> case in the 'Source' folder. Therefore, I have added
>> the paths
>> of the respective bin and lib folders from the 'Build'
>> folder
>> (not Source) to my .bashrc file (attached in this email).
>> However, none of the programs (including the completed
>> ITK, QT
>> and VTK) seem to work even if I want to check which
>> version I
>> have installed using the command e.g itk --version. I
>> have now
>> deleted the precompiled 'VV' Oct 2012 version which
>> used to work
>> with the command vv. However, the command vv now gives
>> the
>> output 'command not found'.
>>
>> I'm not sure if I have done the export path correctly on
>> my
>> .bashrc as I have referenced it to the 'Build' folder
>> and not
>> the 'Source' folder as there was no bin or lib folders
>> within
>> that. Furthermore, I have no idea why the errors
>> occurred.
>>
>> Please let me know if you have any suggestions.
>>
>> Best wishes,
>>
>> Bilal Tahir,
>> James Morrison Researcher in Radiotherapy Imaging,
>> University of Sheffield/Weston Park Cancer Hospital
>>
>
> --
> Vivien Delmon
> PhD student at CREATIS, Lyon
> Supported by ANRT and ELEKTA
> http://www.creatis.insa-lyon.**fr/rio<http://www.creatis.insa-lyon.fr/rio>
> ______________________________**_________________
> vv mailing list
> vv at creatis.insa-lyon.fr
> http://www.creatis.insa-lyon.**fr/mailman/listinfo/vv<http://www.creatis.insa-lyon.fr/mailman/listinfo/vv>
>
--
Bilal Tahir,
James Morrison Researcher in Radiotherapy Imaging
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://www.creatis.insa-lyon.fr/pipermail/vv/attachments/20130227/747f555f/attachment-0001.html>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: image.png
Type: image/png
Size: 11462 bytes
Desc: not available
URL: <http://www.creatis.insa-lyon.fr/pipermail/vv/attachments/20130227/747f555f/attachment-0001.png>
More information about the vv
mailing list