[Vv] Problems installing CLITK via vv superbuild file
Vivien Delmon
vivien.delmon at creatis.insa-lyon.fr
Wed Feb 27 16:28:52 CET 2013
On 02/27/2013 03:22 PM, Bilal Tahir wrote:
> Dear Vivien,
>
> I deleted the previous version of vv and after installing and adding the
> path, I got the following error:
>
>
> Inline images 1
>
libstatgrab is an optional dependency of VV. Since it is installed on my
computer the nightly build use it.
I just added an option to deactivate this optional dependency and
updated the nightly build, you can download it again.
Thank you for testing vv's nightly build and sorry for the inconveniences.
> Please note that vv was working fine before and it didn't give this
> error. Do you know how to solve it?
>
> Best wishes,
>
> Bilal
>
> On 27 February 2013 13:51, Vivien Delmon
> <vivien.delmon at creatis.insa-lyon.fr
> <mailto:vivien.delmon at creatis.insa-lyon.fr>> wrote:
>
> On 02/24/2013 12:09 PM, Simon Rit wrote:
>
> Dear Bilal,
> We are considering this for VV first but we will not support
> this for
> clitk tools. We are happy to provide clitk tools but users must
> try to
> solve their compilation issues.
>
>
> I just compiled the first vv nightly build (linux 64 bits) which is
> available here :
> http://www.creatis.insa-lyon.__fr/~delmon/vv_nightly/vv-__20130227.sh <http://www.creatis.insa-lyon.fr/~delmon/vv_nightly/vv-20130227.sh>
>
> By the way, compilation of clitk tools, if this is what you are
> interested in, should not require qt if you disable VV compilation
> (CLITK_BUILD_VV:BOOL=OFF).
> Simon
>
> On Sat, Feb 23, 2013 at 12:13 AM, Bilal Tahir
> <b.tahir at sheffield.ac.uk <mailto:b.tahir at sheffield.ac.uk>
> <mailto:b.tahir at sheffield.ac.__uk
> <mailto:b.tahir at sheffield.ac.uk>>> wrote:
>
> Can I make a request that the latest version of VV
> including CLITK
> with all options set to ON be made available as a
> precompiled .sh
> binary file? Slicer3D http://download.slicer.org/ allows for a
> nightly download of the binary version of the latest version.
>
> This is due to my case where I have experienced many errors in
> trying to install the relevant programs until I finally get to
> install CLITK whereas the Oct 2012 precomiled binary .sh
> file worked
> fine on linux for me. However, CLITK was not included in
> that release.
>
> Best wishes,
>
> Bilal
>
> On 22 February 2013 22:58, Bilal Tahir
> <b.tahir at sheffield.ac.uk <mailto:b.tahir at sheffield.ac.uk>
> <mailto:b.tahir at sheffield.ac.__uk
> <mailto:b.tahir at sheffield.ac.uk>>> wrote:
>
> Dear All,
>
> I am trying to install CLITK by adding the relevant =ON
> options
> on the CMakeLists.txt file (attached edited version in this
> email) found in the following link
> https://git.creatis.insa-lyon.__fr/pubgit/?p=clitk.git;a=blob;__f=superbuild/CMakeLists.txt
> <https://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=blob;f=superbuild/CMakeLists.txt>
>
> I then run the following two commands:
>
>
> cmake superbuild-file-directory
> make
>
> However, after running 'make' it started installing the
> programs
> (ITK, QT and VTK) one after the other for several hours
> until it
> reached 60% of the last program 'VV' where it gave the
> following
> errors and stopped:
>
> collect2: ld returned 1 exit status
> make[5]: *** [bin/vv] Error 1
> make[4]: *** [vv/CMakeFiles/vv.dir/all] Error 2
> make[3]: *** [all] Error 2
> make[2]: *** [Stamp/VV/VV-build] Error 2
> make[1]: *** [CMakeFiles/VV.dir/all] Error 2
> make: *** [all] Error 2
>
> I've copied and posted some of the last few lines up
> till the
> point that the error came.
>
> The 'make' command created several folders in my home
> folder
> (/home/md1bat/) including 'Source' and 'Build'. It
> appears that
> ITK, QT and VTK (not VV) completed as you can see from
> the /home/md1bat/CMakeFiles/ folder.
>
> Inline images 1
>
> Within the 'Build' folder, each of the four programs,
> ITK, VTK,
> QT and VV have at least a bin and/or lib folder. This
> is not the
> case in the 'Source' folder. Therefore, I have added
> the paths
> of the respective bin and lib folders from the 'Build'
> folder
> (not Source) to my .bashrc file (attached in this email).
> However, none of the programs (including the completed
> ITK, QT
> and VTK) seem to work even if I want to check which
> version I
> have installed using the command e.g itk --version. I
> have now
> deleted the precompiled 'VV' Oct 2012 version which
> used to work
> with the command vv. However, the command vv now gives the
> output 'command not found'.
>
> I'm not sure if I have done the export path correctly on my
> .bashrc as I have referenced it to the 'Build' folder
> and not
> the 'Source' folder as there was no bin or lib folders
> within
> that. Furthermore, I have no idea why the errors occurred.
>
> Please let me know if you have any suggestions.
>
> Best wishes,
>
> Bilal Tahir,
> James Morrison Researcher in Radiotherapy Imaging,
> University of Sheffield/Weston Park Cancer Hospital
--
Vivien Delmon
PhD student at CREATIS, Lyon
Supported by ANRT and ELEKTA
http://www.creatis.insa-lyon.fr/rio
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