vtkWriteDicomExtended.cxx File Reference

#include <iostream>
#include <vtkImageMapToColors.h>
#include <vtkLookupTable.h>
#include <vtkImageData.h>
#include "vtkGdcmReader.h"
#include "vtkGdcmWriter.h"
#include "gdcmArgMgr.h"
#include "gdcmFile.h"

Include dependency graph for vtkWriteDicomExtended.cxx:

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Defines
#define	vtkFloatingPointType   float
Functions
int	main (int argc, char *argv[])

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Define Documentation

#define vtkFloatingPointType   float

Definition at line 17 of file vtkWriteDicomExtended.cxx.

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Function Documentation

int main (  int  argc, char *  argv[] )

Todo: : fix stupid generated image names (later : JPRx) Definition at line 24 of file vtkWriteDicomExtended.cxx. References FINISH_USAGE, and START_USAGE. { START_USAGE(usage) " \n vtkWriteDicomExtended : \n", " Reads a DICOM file and re writes it according to user's requierements. ", " ", " usage: vtkWriteDicomExtended filein=dicom file to read ", " [filecontent = ] [2D] ", " [noshadowseq][noshadow][noseq] ", " [debug] ", " filecontent = 1 : USER_OWN_IMAGE ", " = 2 : FILTERED_IMAGE ", " = 3 : CREATED_IMAGE ", " = 4 : UNMODIFIED_PIXELS_IMAGE ", " noshadowseq: user doesn't want to load Private Sequences ", " noshadow : user doesn't want to load Private groups (odd number) ", " noseq : user doesn't want to load Sequences ", " debug : user wants to run the program in 'debug mode' ", FINISH_USAGE // Initialize Arguments Manager GDCM_NAME_SPACE::ArgMgr *am= new GDCM_NAME_SPACE::ArgMgr(argc, argv); if (argc == 1 || am->ArgMgrDefined("usage") ) { am->ArgMgrUsage(usage); // Display 'usage' delete am; return 0; } int loadMode = GDCM_NAME_SPACE::LD_ALL; if ( am->ArgMgrDefined("noshadowseq") ) loadMode |= GDCM_NAME_SPACE::LD_NOSHADOWSEQ; else { if ( am->ArgMgrDefined("noshadow") ) loadMode |= GDCM_NAME_SPACE::LD_NOSHADOW; if ( am->ArgMgrDefined("noseq") ) loadMode |= GDCM_NAME_SPACE::LD_NOSEQ; } int filecontent = am->ArgMgrGetInt("filecontent", 1); char *filein = am->ArgMgrWantString("filein",usage); char *fileout = (char *)(am->ArgMgrGetString("fileout","fileout")); if (am->ArgMgrDefined("debug")) GDCM_NAME_SPACE::Debug::DebugOn(); int deuxD = am->ArgMgrDefined("2D"); /* if unused Param we give up */ if ( am->ArgMgrPrintUnusedLabels() ) { am->ArgMgrUsage(usage); delete am; return 0; } // ------------------------------------------------------------ std::vector<GDCM_NAME_SPACE::File* > cfl; GDCM_NAME_SPACE::File *f = GDCM_NAME_SPACE::File::New(); f->SetFileName(filein); f->Load(); cfl.push_back(f); vtkGdcmReader *reader = vtkGdcmReader::New(); reader->AllowLookupTableOff(); //reader->SetFileName( filein ); // in order not to parse twice the input file. reader->SetCoherentFileList(&cfl); reader->Update(); vtkImageData *output; if( reader->GetLookupTable() ) { //convert to color: vtkImageMapToColors *map = vtkImageMapToColors::New (); map->SetInput (reader->GetOutput()); map->SetLookupTable (reader->GetLookupTable()); map->SetOutputFormatToRGB(); output = map->GetOutput(); map->Delete(); } else { output = reader->GetOutput(); } //print debug info: output->Print(cout); // WRITE... //if you wish you can export dicom to a vtk file // this file will have the add of .tmp.dcm extention std::string fileName(filein); vtkGdcmWriter *writer = vtkGdcmWriter::New(); switch (filecontent) { case 1: writer->SetContentTypeToUserOwnImage(); fileName = fileName + "_UserOwnImage.dcm"; break; case 2: writer->SetContentTypeToFilteredImage(); writer->SetGdcmFile( f ); fileName = fileName + "_FilteredImage.dcm"; break; case 3: writer->SetContentTypeToUserCreatedImage(); writer->SetGdcmFile( f ); fileName = fileName + "_UserCreatedImage.dcm"; break; case 4: writer->SetContentTypeToUserCreatedImage(); writer->SetGdcmFile( f ); fileName = fileName + "_UnmodifiedPixelsImage.dcm"; break; } if(deuxD) { writer->SetFileDimensionality(2); writer->SetFilePrefix(fileout); writer->SetFilePattern("%s%d.dcm"); } else { fileName += ".dcm"; // For 3D writer->SetFileDimensionality(3); writer->SetFileName(fileName.c_str()); } writer->SetInput(output); writer->Write(); // Clean up writer->Delete(); reader->Delete(); return 0; }

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