/*=========================================================================

  Program:   Insight Segmentation & Registration Toolkit
  Module:    $RCSfile: itkClosingByReconstructionImageFilter.h,v $
  Language:  C++
  Date:      $Date: 2006/03/17 14:22:25 $
  Version:   $Revision: 1.3 $

  Copyright (c) Insight Software Consortium. All rights reserved.
  See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.

     This software is distributed WITHOUT ANY WARRANTY; without even
     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
     PURPOSE.  See the above copyright notices for more information.

=========================================================================*/
#ifndef __itkClosingByReconstructionImageFilter_h
#define __itkClosingByReconstructionImageFilter_h

#include "itkImageToImageFilter.h"

namespace itk {

/** \class ClosingByReconstructionImageFilter
 * \brief Closing by reconstruction of an image
 *
 * This filter is similar to the morphological closing, but contrary
 * to the mophological closing, the closing by reconstruction
 * preserves the shape of the components.  The closing by
 * reconstruction of an image "f" is defined as:
 *
 * ClosingByReconstruction(f) = ErosionByReconstruction(f, Dilation(f)).
 *
 * Closing by reconstruction not only preserves structures preserved by
 * the dilation, but also levels raises the contrast of the darkest
 * regions. If PreserveIntensities is on, a subsequent reconstruction
 * by dilation using a marker image that is the original image for all
 * unaffected pixels.
 *
 * Closing by reconstruction is described in Chapter 6.3.9 of Pierre
 * Soille's book "Morphological Image Analysis: Principles and
 * Applications", Second Edition, Springer, 2003.
 *
 * \author Gaëtan Lehmann. Biologie du Développement et de la Reproduction, INRA of Jouy-en-Josas, France.
 *
 * \sa GrayscaleMorphologicalClosingImageFilter
 * \ingroup ImageEnhancement  MathematicalMorphologyImageFilters
 */
template<class TInputImage, class TOutputImage, class TKernel>
class ITK_EXPORT ClosingByReconstructionImageFilter : 
    public ImageToImageFilter<TInputImage, TOutputImage>
{
public:
  /** Standard class typedefs. */
  typedef ClosingByReconstructionImageFilter Self;
  typedef ImageToImageFilter<TInputImage, TOutputImage>
  Superclass;
  typedef SmartPointer<Self>        Pointer;
  typedef SmartPointer<const Self>  ConstPointer;

  /** Some convenient typedefs. */
  typedef TInputImage InputImageType;
  typedef TOutputImage OutputImageType;
  typedef typename InputImageType::Pointer         InputImagePointer;
  typedef typename InputImageType::ConstPointer    InputImageConstPointer;
  typedef typename InputImageType::RegionType      InputImageRegionType;
  typedef typename InputImageType::PixelType       InputImagePixelType;
  typedef typename OutputImageType::Pointer        OutputImagePointer;
  typedef typename OutputImageType::ConstPointer   OutputImageConstPointer;
  typedef typename OutputImageType::RegionType     OutputImageRegionType;
  typedef typename OutputImageType::PixelType      OutputImagePixelType;
  
 /** Kernel typedef. */
  typedef TKernel KernelType;

  /** ImageDimension constants */
  itkStaticConstMacro(InputImageDimension, unsigned int,
                      TInputImage::ImageDimension);
  itkStaticConstMacro(OutputImageDimension, unsigned int,
                      TOutputImage::ImageDimension);

  /** Standard New method. */
  itkNewMacro(Self);  

  /** Runtime information support. */
  itkTypeMacro(ClosingByReconstructionImageFilter, 
               ImageToImageFilter);

  /** Set kernel (structuring element). */
  itkSetMacro(Kernel, KernelType);
  
  /** Get the kernel (structuring element). */
  itkGetConstReferenceMacro(Kernel, KernelType);

  /**
   * Set/Get whether the connected components are defined strictly by
   * face connectivity or by face+edge+vertex connectivity.  Default is
   * FullyConnectedOff.  For objects that are 1 pixel wide, use
   * FullyConnectedOn.
   */
  itkSetMacro(FullyConnected, bool);
  itkGetConstReferenceMacro(FullyConnected, bool);
  itkBooleanMacro(FullyConnected);
  
  /**
   * Set/Get whether the original intensities of the image retained for
   * those pixels unaffected by the opening by reconstrcution. If Off,
   * the output pixel contrast will be reduced. */
  itkSetMacro(PreserveIntensities, bool);
  itkGetConstReferenceMacro(PreserveIntensities, bool);
  itkBooleanMacro(PreserveIntensities);

#ifdef ITK_USE_CONCEPT_CHECKING
  /** Begin concept checking */
  itkConceptMacro(InputConvertibleToOutputCheck,
    (Concept::Convertible<InputImagePixelType, OutputImagePixelType>));
  /** End concept checking */
#endif

protected:
  ClosingByReconstructionImageFilter();
  ~ClosingByReconstructionImageFilter() {};
  void PrintSelf(std::ostream& os, Indent indent) const;

  /** ClosingByReconstructionImageFilter needs the entire input be
   * available. Thus, it needs to provide an implementation of
   * GenerateInputRequestedRegion(). */
  void GenerateInputRequestedRegion() ;

  /** ClosingByReconstructionImageFilter will produce the entire output. */
  void EnlargeOutputRequestedRegion(DataObject *itkNotUsed(output));
  
  void GenerateData();
  

private:
  ClosingByReconstructionImageFilter(const Self&); //purposely not implemented
  void operator=(const Self&); //purposely not implemented

  /** kernel or structuring element to use. */
  KernelType m_Kernel ;
  bool                m_FullyConnected;
  bool                m_PreserveIntensities;
} ; // end of class

} // end namespace itk
  
#ifndef ITK_MANUAL_INSTANTIATION
#include "itkClosingByReconstructionImageFilter.txx"
#endif

#endif


