[Vv] clitkRegionGrowing

[Thomas BAUDIER]

Hi Benoit,

With the option t=1, the algorithm uses 
NeighborhoodConnectedImageFilter:
https://itk.org/Doxygen/html/classitk_1_1NeighborhoodConnectedImageFilter.html

If I understand correctly the documentation, to be labeled, a voxel has 
to be connected to the seed AND all its neighbor voxels (defined by the 
radius option) also.
So If your output correspond to the seed, maybe your radius (-r 10) is 
too high. By default it's 1 but you can try with 0 and other value 
between 0 and 10.

Regards
Thomas


On 2019-03-23 16:40, Benoît Presles wrote:
> Dear vv users,
> 
> I have tried to use the clitkRegionGrowing tool with the -t 1 option
> (neighborhood-threshold algorithm) but I did not manage to make it
> work.
> 
> With the -t 0 option (threshold algorithm) everything seems to work
> well but when I switch to -t 1 (-t 1 -r 10), the result is a seed
> image. Do I have to set other options ?
> 
> 
> Thanks for your help,
> Best regards,
> Ben
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