[Vv] vv Digest, Vol 51, Issue 2

Thu Apr 7 17:08:47 CEST 2016

Yes, it is what I understood. As I receive my DICOM files globally, I
wondered if I could load them directly in VV without preprocessing.

Thank you
-A.

On Thu, Apr 7, 2016 at 12:00 PM, <vv-request at creatis.insa-lyon.fr> wrote:

> Send vv mailing list submissions to
>         vv at creatis.insa-lyon.fr
>
> To subscribe or unsubscribe via the World Wide Web, visit
>         http://www.creatis.insa-lyon.fr/mailman/listinfo/vv
> or, via email, send a message with subject or body 'help' to
>         vv-request at creatis.insa-lyon.fr
>
> You can reach the person managing the list at
>         vv-owner at creatis.insa-lyon.fr
>
> When replying, please edit your Subject line so it is more specific
> than "Re: Contents of vv digest..."
>
>
> Today's Topics:
>
>    1. Re: DICOM 3D+t (Mohammad VARASTEH ANVAR)
>    2. Problems building VV : need help ! (Matthieu Dondey)
>    3. Re: Problems building vv : need help (Matthieu Dondey)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Wed, 6 Apr 2016 09:37:40 +0200
> From: "Mohammad VARASTEH ANVAR" <varasteh at to.infn.it>
> To: vv at creatis.insa-lyon.fr
> Subject: Re: [Vv] DICOM 3D+t
> Message-ID:
>         <8b302e9f2e8454f9f7baadbed0511aab.squirrel at webmail.to.infn.it>
> Content-Type: text/plain;charset=utf-8
>
> Dear Aur?lien,
>
> If I understood correctly you want to load 10 phases of a 4D-CT as 3D+t.
>
> If so, first you should change the DICOM series of each phase to a single
> *.nii or *.mhd. Then you can load the (*.nii or *.mhd)s via "merge several
> nD images into a single (n+1)D image.
>
> This is the method which I use to merge the 4D-CT volumes together and
> play as a 3D+t.
>
> Regards,
>        varasteh
> _______________________________________________
>
> Dear all,
>
> I'm totally new to VV.
> I try to load a (3D+t) DICOM serie with VV (512x512 x 91 slices x 10
> phases). I obtain a 3D image only, with one dimension too long (910
> slices), see attached.
> Can anyone give me an advice to manage this kind of serie?
> Note that the Dicom Series Selector sees only 1 image (with 910 files).
>
> Regards
> Aur?lien
> _______________________________________________
> vv mailing list
> vv at creatis.insa-lyon.fr
> http://www.creatis.insa-lyon.fr/mailman/listinfo/vv
>
>
>
>
> ------------------------------
>
> Message: 2
> Date: Wed, 6 Apr 2016 11:34:42 +0200
> From: Matthieu Dondey <m.dondey at gmail.com>
> To: vv at creatis.insa-lyon.fr
> Subject: [Vv] Problems building VV : need help !
> Message-ID:
>         <
> CAGue2fBkT-4A6JHq0uU_3epyH2Z6c_77e3+yNLfpcczhy1G0cA at mail.gmail.com>
> Content-Type: text/plain; charset="utf-8"
>
> I can't manage to build VV correctly and it seems that I've tried all what
> my newbie abilities in software building could allow.
>
>
> I've tried building step by step following what was recommended on the
> site, building from source.
>
>
> In the end, VTK and ITK build okay but VV crashes during the building
> process.
>
>
> Here are the errors that I have while building VV (along with many other
> warnings) :
>
>
> make[2]: ***
> [tools/CMakeFiles/clitkCropImageLib.dir/clitkCropImageGenericFilter.cxx.o]
> Erreur 1
>
> make[1]: *** [tools/CMakeFiles/clitkCropImageLib.dir/all] Erreur 2
>
>
> /home/myplace/mesProgs/vv/vv-src/common/clitkMemoryUsage.cxx:48:38: error:
> cannot convert ?int*? to ?size_t* {aka long unsigned int*}? for argument
> ?1? to ?sg_process_stats* sg_get_process_stats(size_t*)? make[2]: ***
> [common/CMakeFiles/clitkCommon.dir/clitkMemoryUsage.cxx.o] Erreur 1
>
>
>
> make[1]: *** [common/CMakeFiles/clitkCommon.dir/all] Erreur 2
>
>
> and it stops at around 28 % with
>
>
> Linking CXX static library ../lib/libclitkAffineRegistrationLib.a
>
> [ 28%] Built target clitkAffineRegistrationLib
>
> make: *** [all] Erreur 2
>
>
> Here are the versions of the packages that I use :
>
> - cmake : 2.8.12.2
>
> - gcc and g++  : I was using by default the 4.8 version but I had to use
> the 4.6 in order to build ITK
>
> - qt : 4
>
> - VTK : 5.10
>
> - ITK : 3.2
>
> - VV : October 2012 release
>
>
>
> VTK and ITK are installed locally in my /usr/local folder and from what I'm
> guessing it seems that the VV build has trouble finding all the ITK files
> needed to build correctly.
>
>
> Maybe there's a linking part that I should have done, but I have no idea
> how to do it ? maybe something I should add in my .bashrc file ? I dunno
> :'(
>
>
> If anyone could help, it would be greatly appreciated.
>
>
> Cheers,
>
>
> Matthieu
> -------------- next part --------------
> An HTML attachment was scrubbed...
> URL: <
> http://www.creatis.insa-lyon.fr/pipermail/vv/attachments/20160406/d52b904b/attachment-0001.html
> >
>
> ------------------------------
>
> Message: 3
> Date: Wed, 6 Apr 2016 11:42:08 +0200
> From: Matthieu Dondey <m.dondey at gmail.com>
> To: vv at creatis.insa-lyon.fr
> Subject: Re: [Vv] Problems building vv : need help
> Message-ID:
>         <CAGue2fDbEo4yqUfZ-1i+AHq+wJ7ky7kRNKYpctv=
> DezJC3_zcA at mail.gmail.com>
> Content-Type: text/plain; charset="utf-8"
>
> Dear VV users, sorry my mail was sent a bit too quickly without proper
> greetings,
>
> here it is again :)
>
>
> Dear VV users,
>
> ?I can't manage to build VV correctly and it seems that I've tried all what
> my newbie abilities in software building could allow.
>
>
> I've tried building step by step following what was recommended on the
> site, building from source.
>
>
> In the end, VTK and ITK build okay but VV crashes during the building
> process.
>
>
> Here are the errors that I have while building VV (along with many other
> warnings) :
>
>
> make[2]: ***
> [tools/CMakeFiles/clitkCropImageLib.dir/clitkCropImageGenericFilter.cxx.o]
> Erreur 1
>
> make[1]: *** [tools/CMakeFiles/clitkCropImageLib.dir/all] Erreur 2
>
>
> /home/myplace/mesProgs/vv/vv-src/common/clitkMemoryUsage.cxx:48:38: error:
> cannot convert ?int*? to ?size_t* {aka long unsigned int*}? for argument
> ?1? to ?sg_process_stats* sg_get_process_stats(size_t*)? make[2]: ***
> [common/CMakeFiles/clitkCommon.dir/clitkMemoryUsage.cxx.o] Erreur 1
>
>
>
> make[1]: *** [common/CMakeFiles/clitkCommon.dir/all] Erreur 2
>
>
> and it stops at around 28 % with
>
>
> Linking CXX static library ../lib/libclitkAffineRegistrationLib.a
>
> [ 28%] Built target clitkAffineRegistrationLib
>
> make: *** [all] Erreur 2
>
>
> Here are the versions of the packages that I use :
>
> - cmake : 2.8.12.2
>
> - gcc and g++  : I was using by default the 4.8 version but I had to use
> the 4.6 in order to build ITK
>
> - qt : 4
>
> - VTK : 5.10
>
> - ITK : 3.2
>
> - VV : October 2012 release
>
>
>
> VTK and ITK are installed locally in my /usr/local folder and from what I'm
> guessing it seems that the VV build has trouble finding all the ITK files
> needed to build correctly.
>
>
> Maybe there's a linking part that I should have done, but I have no idea
> how to do it ? maybe something I should add in my .bashrc file ? I dunno
> :'(
>
>
> If anyone could help, it would be greatly appreciated.
>
>
> Cheers,
>
>
> Matthieu
> -------------- next part --------------
> An HTML attachment was scrubbed...
> URL: <
> http://www.creatis.insa-lyon.fr/pipermail/vv/attachments/20160406/b40113b3/attachment-0001.html
> >
>
> ------------------------------
>
> Subject: Digest Footer
>
> _______________________________________________
> vv mailing list
> vv at creatis.insa-lyon.fr
> http://www.creatis.insa-lyon.fr/mailman/listinfo/vv
>
> ------------------------------
>
> End of vv Digest, Vol 51, Issue 2
> *********************************
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://www.creatis.insa-lyon.fr/pipermail/vv/attachments/20160407/f608513b/attachment.html>