[Vv] Errors with clitkExtractLung

[Vivien Delmon]

On 10/23/2013 06:15 PM, Bilal Tahir wrote:
> Thanks Vivien,
>
> I've got passed the .afdb stage. However I'm getting errors at the
> 'search for trachea' stage for both the original and LOLA11 algorithms.
> The dataset is the inspiration scans for patient 1 of the dir-lab copd
> data.

For the first patient I successfully got a lung mask by manually giving 
the seed in the trachea.

clitkExtractLung -i copd1_50.mhd -o MASK/lungs_mask_copd1_50.mhd --seed 
150,125,-18

The trachea finding part is not very robust. That's why we tried to fix 
it during LOLA11 challenge. My current version of clitkExtractLung does 
not work with --type=1 I will try to fix it next week to see what happens.

-- 
Vivien Delmon
PhD student at CREATIS, Lyon
Supported by ANRT and ELEKTA
http://www.creatis.insa-lyon.fr/rio

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