[Vv] Errors with clitkExtractLung

[Bilal Tahir]

Dear VV community,

Going back to my previous errors with running *clitkExtractLung, *I would
like to know what the .afdb file is and why it is causing errors? I only
want to create masks for the left and right lungs and not anything else
such as the trachea/airways so I'm not sure why I am getting this error.
Perhaps its a mistake in my command line?

Best wishes,

Bilal


On 17 October 2013 23:08, Bilal Tahir <b.tahir at sheffield.ac.uk> wrote:

> Dear VV community,
>
> I am getting some errors with clitkExtractLung for the COPD dir lab CT
> datasets. I basically set the input but leave everything else with default
> values. Here is my output below:
>
> [md1bat at testnode04 mhd]$ clitkExtractLung --verbose --input=copd1_00.mhd
> Input is 3D short.
> Reading [copd1_00.mhd] ...
> ******* Could not read 'default.afdb', create one AFDB. ********
>
> itk::ExceptionObject (0x23f2da0)
> Location: "Unknown"
> File:
> /home/md1bat/Source/vv/segmentation/clitkAnatomicalFeatureDatabase.txx
> Line: 27
> Description: Could not find the tag <Patient> of type 'Image' in the DB
> ('default.afdb')
>
>
> Please let me know your suggestions?
>
> Also I would like to know if the LOLA11 paper below is the correct
> reference if I decide to use your method for publications?
>
>
> http://lola11.com/Results/displayApproved?result=20110708160218_86_CREATIS_CLB_Lyon_graphcut&file=20110708160218_86_CREATIS_CLB_Lyon_graphcut_lola11.pdf
>
>
> Kind regards,
>
> Bilal Tahir,
> James Morrison Researcher in Radiotherapy Imaging,
> Department of Clinical Oncology,
> University of Sheffield
>



-- 
Bilal Tahir,
James Morrison Researcher in Radiotherapy Imaging,
Department of Clinical Oncology,
University of Sheffield
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