[Vv] [clitk-commits-list] clitk branch master updated. v1.2.0-1252-g2b5b3e9
David Sarrut
David.Sarrut at creatis.insa-lyon.fr
Tue Jun 4 10:28:33 CEST 2013
Hello,
opening dicom-rt struct did not work properly with itk4.
Now works with itk4 if compiled with system GDCM (git version). You still
need to specify the GDCM_DIR in the vv/clitk cmake. Still work with itk3 as
previously.
In VV, to open a dicom-rt-struct : choose Tools->Open ROI.
David
On Tue, Jun 4, 2013 at 10:24 AM, root <root at tux.creatis.insa-lyon.fr> wrote:
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> Those revisions listed above that are new to this repository have
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> - Log -----------------------------------------------------------------
>
> http://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=commitdiff;h=2b5b3e906ee95519169e9b6d4bb2da9d2e00d8b3
> commit 2b5b3e906ee95519169e9b6d4bb2da9d2e00d8b3
> Merge: 26bcb2d 35620b6
> Author: David Sarrut <david.sarrut at creatis.insa-lyon.fr>
> Date: Tue Jun 4 10:24:32 2013 +0200
>
> Merge branch 'rtstruct-with-itk4'
>
>
>
> http://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=commitdiff;h=26bcb2de1cbf158bdb6b76175a7c8db4b5f269dc
> commit 26bcb2de1cbf158bdb6b76175a7c8db4b5f269dc
> Merge: 0255ca4 97bd2d6
> Author: David Sarrut <david.sarrut at creatis.insa-lyon.fr>
> Date: Tue Jun 4 10:24:12 2013 +0200
>
> Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
>
>
>
> http://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=commitdiff;h=35620b6e7b940cbeea17a58411e2dbba04484b17
> commit 35620b6e7b940cbeea17a58411e2dbba04484b17
> Author: David Sarrut <david.sarrut at gmail.com>
> Date: Fri Feb 3 07:57:12 2012 +0100
>
> Remove debug
>
>
>
> http://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=commitdiff;h=c25433eb0e15bbaacdc9b1a976c8e19e6b155073
> commit c25433eb0e15bbaacdc9b1a976c8e19e6b155073
> Author: David Sarrut <david.sarrut at gmail.com>
> Date: Fri Feb 3 07:57:12 2012 +0100
>
> Prevent to use deprecated function
>
>
>
> http://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=commitdiff;h=fff86d41f8c202d2a457fb6c135adfbb19d3342f
> commit fff86d41f8c202d2a457fb6c135adfbb19d3342f
> Author: David Sarrut <david.sarrut at gmail.com>
> Date: Fri Feb 3 07:57:12 2012 +0100
>
> Remove debug.
>
>
>
> http://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=commitdiff;h=004bcd39f231a113951c678008140722b0b28152
> commit 004bcd39f231a113951c678008140722b0b28152
> Author: David Sarrut <david.sarrut at gmail.com>
> Date: Fri Feb 3 07:57:12 2012 +0100
>
> Prevent to reload if contours from dicom-rt-struct
>
>
>
> http://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=commitdiff;h=3750a66140f2bce96943760132383b368178671d
> commit 3750a66140f2bce96943760132383b368178671d
> Author: David Sarrut <david.sarrut at gmail.com>
> Date: Fri Feb 3 07:57:12 2012 +0100
>
> cosmetic
>
>
>
> http://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=commitdiff;h=58f48784852ac6897f690a9ccbb2519ab8e5d9b6
> commit 58f48784852ac6897f690a9ccbb2519ab8e5d9b6
> Author: David Sarrut <david.sarrut at gmail.com>
> Date: Fri Feb 3 07:57:12 2012 +0100
>
> Remove debug verbose
>
>
>
> http://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=commitdiff;h=6602236c0915f243de03923120ff358744eaec8f
> commit 6602236c0915f243de03923120ff358744eaec8f
> Author: David Sarrut <david.sarrut at gmail.com>
> Date: Fri Feb 3 07:57:12 2012 +0100
>
> Remove open dicom struct -> use tool ROI instead
>
>
>
> http://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=commitdiff;h=6705f1ed6b49ab6beb5361f97289db44da1dc3bb
> commit 6705f1ed6b49ab6beb5361f97289db44da1dc3bb
> Author: David Sarrut <david.sarrut at gmail.com>
> Date: Fri Feb 3 07:57:12 2012 +0100
>
> Remove open dicomstruct -> use tool ROI instead
>
>
>
> http://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=commitdiff;h=292caf3cde03e7d88a074282ead314b0e2688a83
> commit 292caf3cde03e7d88a074282ead314b0e2688a83
> Author: David Sarrut <david.sarrut at gmail.com>
> Date: Fri Feb 3 07:57:12 2012 +0100
>
> Remove debug verbose
>
>
>
> http://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=commitdiff;h=9850d1cd9cbe91c5e2b5e4fcf217d30cfcecc621
> commit 9850d1cd9cbe91c5e2b5e4fcf217d30cfcecc621
> Author: David Sarrut <david.sarrut at gmail.com>
> Date: Fri Feb 3 07:57:12 2012 +0100
>
> Add GDCM lib
>
>
>
> http://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=commitdiff;h=6986b996d66273ab7818c12f51cbf5ae049ac04e
> commit 6986b996d66273ab7818c12f51cbf5ae049ac04e
> Author: David Sarrut <david.sarrut at gmail.com>
> Date: Fri Feb 3 07:57:12 2012 +0100
>
> First version to convert image to dicomrtstruct
>
>
>
> http://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=commitdiff;h=57499386d9ad93360c10b27b6cd6b75442089810
> commit 57499386d9ad93360c10b27b6cd6b75442089810
> Author: David Sarrut <david.sarrut at gmail.com>
> Date: Fri Feb 3 07:57:12 2012 +0100
>
> Remove gdcm dep
>
>
>
> http://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=commitdiff;h=f203197b333c9d9ebe8ec479ce42979306c63b20
> commit f203197b333c9d9ebe8ec479ce42979306c63b20
> Author: David Sarrut <david.sarrut at gmail.com>
> Date: Fri Feb 3 07:57:12 2012 +0100
>
> Remove debug
>
>
>
> http://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=commitdiff;h=89a8fa2bb1c1b40c20011729ee6dca940ce96496
> commit 89a8fa2bb1c1b40c20011729ee6dca940ce96496
> Author: David Sarrut <david.sarrut at gmail.com>
> Date: Fri Feb 3 07:57:12 2012 +0100
>
> Use vtkGDCMPolyDataReader to read mesh
>
>
>
> http://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=commitdiff;h=4dc4827f49ddaf109bfb70fb1da7740e35d23040
> commit 4dc4827f49ddaf109bfb70fb1da7740e35d23040
> Author: David Sarrut <david.sarrut at gmail.com>
> Date: Fri Feb 3 07:57:12 2012 +0100
>
> Indicate that shift cuold be used on mac to grab image
>
>
>
> http://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=commitdiff;h=db358353c7af7e999daac01b0dce3ed72be10a65
> commit db358353c7af7e999daac01b0dce3ed72be10a65
> Author: David Sarrut <david.sarrut at gmail.com>
> Date: Fri Feb 3 07:57:12 2012 +0100
>
> Allow to combine multiple elastix transfo
>
>
>
> http://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=commitdiff;h=13f714ac5d39785777cef3a7da2baa4f56ddaa91
> commit 13f714ac5d39785777cef3a7da2baa4f56ddaa91
> Author: David Sarrut <david.sarrut at gmail.com>
> Date: Fri Feb 3 07:57:12 2012 +0100
>
> Compile with both itk3 and itk4
>
>
>
> http://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=commitdiff;h=96e6c44903f61cc6238d51d574f4799f62d40a4e
> commit 96e6c44903f61cc6238d51d574f4799f62d40a4e
> Author: David Sarrut <david.sarrut at gmail.com>
> Date: Fri Feb 3 07:57:12 2012 +0100
>
> remove file present in (system) gdcm
>
>
>
> http://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=commitdiff;h=9ad40998f59e733989f28f05bed0299979848638
> commit 9ad40998f59e733989f28f05bed0299979848638
> Author: David Sarrut <david.sarrut at gmail.com>
> Date: Fri Feb 3 07:57:12 2012 +0100
>
> Read with vtkGDCMPolyDataReader
>
>
>
> http://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=commitdiff;h=ef33edbce5ce9f897e3e6acbc5d36718407329c0
> commit ef33edbce5ce9f897e3e6acbc5d36718407329c0
> Author: David Sarrut <david.sarrut at gmail.com>
> Date: Fri Feb 3 07:57:12 2012 +0100
>
> Read dicom-rt with vtkGDCMPolyDataReader
>
>
>
> http://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=commitdiff;h=d679103224c795e1e99cc3c33dd1c07fe94151f6
> commit d679103224c795e1e99cc3c33dd1c07fe94151f6
> Author: David Sarrut <david.sarrut at gmail.com>
> Date: Fri Feb 3 07:57:12 2012 +0100
>
> Add gdcm lib is compiled with system gdcm
>
>
>
> http://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=commitdiff;h=7eb8ed48509d44c5685ecd3e23231762c815dacc
> commit 7eb8ed48509d44c5685ecd3e23231762c815dacc
> Author: David Sarrut <david.sarrut at gmail.com>
> Date: Fri Feb 3 07:57:12 2012 +0100
>
> Check if itk was compiled with system_gdcm
>
>
>
> http://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=commitdiff;h=e7cb2c22122c17c3bbc356165ddfb75a8512c66e
> commit e7cb2c22122c17c3bbc356165ddfb75a8512c66e
> Author: David Sarrut <david.sarrut at gmail.com>
> Date: Fri Feb 3 07:57:12 2012 +0100
>
> Remove unused option
>
>
>
> http://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=commitdiff;h=0a1b1d047250635b1f69ec1f5ee93bc3a51eee59
> commit 0a1b1d047250635b1f69ec1f5ee93bc3a51eee59
> Author: David Sarrut <david.sarrut at gmail.com>
> Date: Fri Feb 3 07:57:12 2012 +0100
>
> Change tool description
>
>
>
> http://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=commitdiff;h=3d1a811fcee80cb36cb8938a529d69c482f4fea2
> commit 3d1a811fcee80cb36cb8938a529d69c482f4fea2
> Author: David Sarrut <david.sarrut at gmail.com>
> Date: Fri Feb 3 07:57:12 2012 +0100
>
> Replace old gdcm code with vtkGDCMPolyData
>
>
>
> http://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=commitdiff;h=355af9d476ce187bd11cd851b823a49a1b3face7
> commit 355af9d476ce187bd11cd851b823a49a1b3face7
> Author: David Sarrut <david.sarrut at gmail.com>
> Date: Fri Feb 3 07:57:12 2012 +0100
>
> for vvToolROIManager, add link with gdcm-vtk
>
>
>
> http://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=commitdiff;h=fddfefca695764eac5d921342d1f764a6465cbde
> commit fddfefca695764eac5d921342d1f764a6465cbde
> Author: David Sarrut <david.sarrut at gmail.com>
> Date: Fri Feb 3 07:57:12 2012 +0100
>
> Check if use system gdcm to include vtkGDCMPolyData
>
>
>
> http://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=commitdiff;h=1541351548cbb579168c9f1a16fe967c42a8d66a
> commit 1541351548cbb579168c9f1a16fe967c42a8d66a
> Author: David Sarrut <david.sarrut at gmail.com>
> Date: Fri Feb 3 07:57:12 2012 +0100
>
> Remove verbose debug
>
>
>
> http://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=commitdiff;h=495e7bfd8f4975243c556d0de35a558fc18cabde
> commit 495e7bfd8f4975243c556d0de35a558fc18cabde
> Author: David Sarrut <david.sarrut at gmail.com>
> Date: Fri Feb 3 07:57:12 2012 +0100
>
> Add variable CLITK_USE_SYSTEM_GDCM
>
>
>
> http://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=commitdiff;h=4951184c1f1b9f31b2df0bc5b15dd4ab1c39990b
> commit 4951184c1f1b9f31b2df0bc5b15dd4ab1c39990b
> Author: David Sarrut <david.sarrut at gmail.com>
> Date: Fri Feb 3 07:57:12 2012 +0100
>
> Add libvtkgdcm to clitkDicomRTStructLib
>
>
>
> http://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=commitdiff;h=521d8b525b85c3c29c990c1e1ea6a2055270aa40
> commit 521d8b525b85c3c29c990c1e1ea6a2055270aa40
> Author: David Sarrut <david.sarrut at gmail.com>
> Date: Fri Feb 3 07:57:12 2012 +0100
>
> Add option to link with external gdcm (forrt-struct + itk4)
>
>
>
> http://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=commitdiff;h=0255ca419966ffe3fd22609cdc8693673e3e4cff
> commit 0255ca419966ffe3fd22609cdc8693673e3e4cff
> Merge: b5bdc19 05c1da2
> Author: David Sarrut <david.sarrut at creatis.insa-lyon.fr>
> Date: Tue May 21 08:50:16 2013 +0200
>
> Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
>
>
>
> http://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=commitdiff;h=b5bdc1984fefe2d79ebd5d791daa363c52c0f19b
> commit b5bdc1984fefe2d79ebd5d791daa363c52c0f19b
> Merge: 7d0158c 37b378b
> Author: David Sarrut <david.sarrut at creatis.insa-lyon.fr>
> Date: Wed Apr 24 08:21:28 2013 +0200
>
> Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
>
>
>
> http://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=commitdiff;h=7d0158cf9f84d02f978de3132dd7ea1e507d1adc
> commit 7d0158cf9f84d02f978de3132dd7ea1e507d1adc
> Merge: fb28336 7f45687
> Author: David Sarrut <david.sarrut at creatis.insa-lyon.fr>
> Date: Fri Apr 19 13:22:58 2013 +0200
>
> Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
>
>
>
> http://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=commitdiff;h=fb28336c3cac08742cd8175bf9f74534d114c295
> commit fb28336c3cac08742cd8175bf9f74534d114c295
> Author: David Sarrut <david.sarrut at gmail.com>
> Date: Fri Feb 3 07:57:12 2012 +0100
>
> Deal with options --like and --spacinglike at the same time
>
>
>
> http://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=commitdiff;h=9259ccb7138d0a678a677c8fccd283563154036e
> commit 9259ccb7138d0a678a677c8fccd283563154036e
> Author: David Sarrut <david.sarrut at gmail.com>
> Date: Fri Feb 3 07:57:12 2012 +0100
>
> Add option "spacinglike"
>
>
> -----------------------------------------------------------------------
>
> Summary of changes:
> cmake/build_opt.cmake | 1 +
> cmake/dependencies.cmake | 19 +
> common/CMakeLists.txt | 31 +-
> common/clitkConfiguration.h.in | 1 +
> common/clitkDicomRTStruct2ImageFilter.cxx | 10 +-
> common/clitkDicomRT_ROI.cxx | 83 ++-
> common/clitkDicomRT_ROI.h | 10 +
> common/clitkDicomRT_StructureSet.cxx | 42 +-
> common/clitkDicomRT_StructureSet.h | 8 +
> common/clitkImage2DicomRTStructFilter.h | 11 +-
> common/clitkImage2DicomRTStructFilter.txx | 159 +++++-
> common/vtkGDCMPolyDataReader.cxx | 826
> ----------------------------
> common/vtkGDCMPolyDataReader.h | 101 ----
> itk/clitkBinaryImageToMeshFilter.h | 131 +++++
> itk/clitkBinaryImageToMeshFilter.txx | 194 +++++++
> itk/clitkExtractSliceFilter.txx | 5 +-
> tools/clitkAffineTransform.ggo | 3 +-
> tools/clitkAffineTransformGenericFilter.h | 2 +-
> tools/clitkAffineTransformGenericFilter.txx | 164 ++++--
> vv/CMakeLists.txt | 17 +-
> vv/qt_ui/vvHelpDialog.ui | 44 +-
> vv/qt_ui/vvMainWindow.ui | 3 +-
> vv/vvMainWindow.cxx | 4 +-
> vv/vvMeshReader.cxx | 285 ++++++----
> vv/vvToolROIManager.cxx | 14 +-
> 25 files changed, 996 insertions(+), 1172 deletions(-)
> delete mode 100644 common/vtkGDCMPolyDataReader.cxx
> delete mode 100644 common/vtkGDCMPolyDataReader.h
> create mode 100644 itk/clitkBinaryImageToMeshFilter.h
> create mode 100644 itk/clitkBinaryImageToMeshFilter.txx
>
>
> hooks/post-receive
> --
> Public Command Line ITK tools and VV
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--
David Sarrut, Phd
Chargé de recherche CNRS
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28 rue Laënnec, 69373 Lyon cedex 08
Tel : 04 78 78 51 51 / 06 74 72 05 42
http://www.creatis.insa-lyon.fr/~dsarrut
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"2 + 2 = 5, for extremely large values of 2"
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