[Vv] vv Digest, Vol 11, Issue 6

bharath nkbharath at gmail.com
Mon Feb 14 13:55:48 CET 2011


Hi VVusers!,

Nice to come back to vv !..

to answer Michal questions, here are a few possible pointers that  may work
regarding your errors in MSVC.

1) for the error "please convert the source file to either DOS or UNIX
format"
You could try to convert the line endings to Windows CR LF or Macintosh(i
dont remember which one worked!). from File->Advanced Save Options->LIne
Endings.

2) for the  error on "clitkAffineRegistrationLib" , you could turn off
Registration option off in the cmake gui and then recompile.

3)  for "fatal error LNK1181: cannot open input file 'ITKAlgorithms.lib'",
make sure you compiled ITK in the same configuration as
with VV. I think you compiled ITK in Debug, and hence clitk works with Debug
configuation. Make sure you compile ITK in Release to
supress the error.
alternatively  you may want to have a look at this
link..http://www.itk.org/pipermail/insight-users/2007-March/021248.html

4)for  fatal error C1128: number of sections exceeded object file format
limit : compile with /bigobj. Try including this option /bigobj in Project
properties->C++ ->Linker settings ->Command line ...
Hope this helps..

Regards
Bharath


Regarding the r
On Mon, Feb 14, 2011 at 12:00 PM, <vv-request at creatis.insa-lyon.fr> wrote:

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> Today's Topics:
>
>   1. Compiling src of VV - almost successful (Michal Srna)
>   2. Re: Compiling src of VV - almost successful (David Sarrut)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Sun, 13 Feb 2011 14:07:24 +0100
> From: Michal Srna <michal at srna.info>
> To: vv at creatis.insa-lyon.fr
> Subject: [Vv] Compiling src of VV - almost successful
> Message-ID: <4D57D78C.2090907 at srna.info>
> Content-Type: text/plain; charset=ISO-8859-2; format=flowed
>
> Hello,
>
> I have compiled/installed and prepared all prerequisites needed for VV
> compilation from src (Qt, VTK, ITK, Gengetopt) step by step described on
> VV web. I am on Windows 7 (64b) with MSVC++ 2008 Express Edition.
>
> Now I have 3 questions and it will really help me, if someone could
> answer me:
>
> 1) When I download src zip file from this site
>
> http://www.creatis.insa-lyon.fr/rio/vv?action=AttachFile&do=view&target=vvSource-1.1.tar.gz
> and run CMake it says me, that Gengetopt is not installed (but I have
> installed it, I also tried to add it in PATH) - so I manually select
> path to the X:\GnuWin32\bin (is it OK?) and run Generate in CMake.
>
> Then I open generated solution in my MSVC++ and everything is OK, I will
> select Debug mode and build the solution (F7) -> it will create .exe
> file and I can run VV (works like a charm).
>
> But when I select Release mode (in Solution Configurations), it will
> write one error at the end of building: "fatal error LNK1181: cannot
> open input file 'ITKAlgorithms.lib'". I don't know, what am I doing
> wrong... maybe I can not use Release mode for VV building and I need to
> use only Debug?
>
> 2) When I downloaded src from CVS (clitk3) and did everything same as in
> step 1) (where I used src from zip file), it will build no vv.exe file
> and it will write 2 errors in part of building vv project:
>
> itkBinaryThinningImageFilter3D.h : error C4335: Mac file format
> detected: please convert the source file to either DOS or UNIX format
>
> itkBinaryThinningImageFilter3D.h : error C4335: Mac file format
> detected: please convert the source file to either DOS or UNIX format
>
> I will get also one more error in part of bulding
> clitkAffineRegistrationLib, the error is:
>
> c:\program files (x86)\microsoft visual studio
> 9.0\vc\include\vector(1261) : fatal error C1128: number of sections
> exceeded object file format limit : compile with /bigobj
>
> Could it be the problem, that I am doing it on files from CVS - I
> downloaded whole folder clitk3? Should I use only vvSource-1.1.tar.gz
> file, which works for me?
>
> 3) I would like to make some changes in the code - is it better to do
> that directly in src files (for example directly open the .cxx file I
> need to change) or can I make these changes in Solution, which was
> generated by CMake after I opened it in my MSVC++?
>
> Thanks for answer on my questions!
>
>
> --
> S pozdravem Bc. Michal Srna
>
> Fotografick? portfolio:
> http://michalsrna.cz
>
>
>
> ------------------------------
>
> Message: 2
> Date: Mon, 14 Feb 2011 08:17:00 +0100
> From: David Sarrut <David.Sarrut at creatis.insa-lyon.fr>
> To: vv <vv at creatis.insa-lyon.fr>
> Subject: Re: [Vv] Compiling src of VV - almost successful
> Message-ID:
>        <AANLkTinjn381vJKg4AdaJeC+KJ3s+NE7-MGvvrUOCYO6 at mail.gmail.com>
> Content-Type: text/plain; charset="iso-8859-1"
>
> Hello Michal,
>
> first, thanks for you interest in VV !
>
> Our Windows specialist is not here until few weeks, so I am afraid that you
> will have few replies regarding Windows issues.
>
> Regarding the landmarks, we decided to use mm because it remains usable
> even
> if you display the landmarks on a resampled image. It is generally a better
> way to express coordinates in mm rather in pixels. I think it is important
> to not change this behavior. However, we can anyway include pixel
> coordinates as additional columns when writing the landmarks file. It also
> requires that those additional columns are ignored when importing a set of
> landmarks. Is that ok for you ?
>
> The next VV version will probably be released in few weeks/months, so
> I suggest that you continue to try the cvs version. If you manage to
> compile
> (I am sure you will with help of others people in the list), it will then
> be
> easy for you to update the cvs.
>
> Sincerely,
> David
>
> On Sun, Feb 13, 2011 at 2:07 PM, Michal Srna <michal at srna.info> wrote:
>
> > Hello,
> >
> > I have compiled/installed and prepared all prerequisites needed for VV
> > compilation from src (Qt, VTK, ITK, Gengetopt) step by step described on
> VV
> > web. I am on Windows 7 (64b) with MSVC++ 2008 Express Edition.
> >
> > Now I have 3 questions and it will really help me, if someone could
> answer
> > me:
> >
> > 1) When I download src zip file from this site
> >
> http://www.creatis.insa-lyon.fr/rio/vv?action=AttachFile&do=view&target=vvSource-1.1.tar.gzandrun CMake it says me, that Gengetopt is not installed (but I have
> > installed it, I also tried to add it in PATH) - so I manually select path
> to
> > the X:\GnuWin32\bin (is it OK?) and run Generate in CMake.
> >
> > Then I open generated solution in my MSVC++ and everything is OK, I will
> > select Debug mode and build the solution (F7) -> it will create .exe file
> > and I can run VV (works like a charm).
> >
> > But when I select Release mode (in Solution Configurations), it will
> write
> > one error at the end of building: "fatal error LNK1181: cannot open input
> > file 'ITKAlgorithms.lib'". I don't know, what am I doing wrong... maybe I
> > can not use Release mode for VV building and I need to use only Debug?
> >
> > 2) When I downloaded src from CVS (clitk3) and did everything same as in
> > step 1) (where I used src from zip file), it will build no vv.exe file
> and
> > it will write 2 errors in part of building vv project:
> >
> > itkBinaryThinningImageFilter3D.h : error C4335: Mac file format detected:
> > please convert the source file to either DOS or UNIX format
> >
> > itkBinaryThinningImageFilter3D.h : error C4335: Mac file format detected:
> > please convert the source file to either DOS or UNIX format
> >
> > I will get also one more error in part of bulding
> > clitkAffineRegistrationLib, the error is:
> >
> > c:\program files (x86)\microsoft visual studio
> 9.0\vc\include\vector(1261)
> > : fatal error C1128: number of sections exceeded object file format limit
> :
> > compile with /bigobj
> >
> > Could it be the problem, that I am doing it on files from CVS - I
> > downloaded whole folder clitk3? Should I use only vvSource-1.1.tar.gz
> file,
> > which works for me?
> >
> > 3) I would like to make some changes in the code - is it better to do
> that
> > directly in src files (for example directly open the .cxx file I need to
> > change) or can I make these changes in Solution, which was generated by
> > CMake after I opened it in my MSVC++?
> >
> > Thanks for answer on my questions!
> >
> >
> > --
> > S pozdravem Bc. Michal Srna
> >
> > Fotografick? portfolio:
> > http://michalsrna.cz
> >
> > _______________________________________________
> > vv mailing list
> > vv at creatis.insa-lyon.fr
> > http://www.creatis.insa-lyon.fr/mailman/listinfo/vv
> >
>
>
>
> --
> David Sarrut, Phd
> Charg? de recherche CNRS
> Laboratoire CREATIS, UMR CNRS 5220, Inserm U 1044
> Centre de lutte contre le cancer L?on B?rard
> 28 rue La?nnec, 69373 Lyon cedex 08
> Tel : 04 78 78 51 51 / 06 74 72 05 42
> http://www.creatis.insa-lyon.fr/rio
> _________________________________
>  "2 + 2 = 5,  for extremely large values of 2"
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