[pubgit-commits-list] FrontAlgorithms branch master updated. 30e076310c78a53c513b98605e64d661acc954de
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http://git.creatis.insa-lyon.fr/pubgit/?p=FrontAlgorithms.git;a=commitdiff;h=30e076310c78a53c513b98605e64d661acc954de
commit 30e076310c78a53c513b98605e64d661acc954de
Author: Leonardo Florez-Valencia <florez-l at javeriana.edu.co>
Date: Wed Mar 30 18:58:18 2016 -0500
...
http://git.creatis.insa-lyon.fr/pubgit/?p=FrontAlgorithms.git;a=commitdiff;h=8fafb83c41ab35dfc25eb637170882a612924433
commit 8fafb83c41ab35dfc25eb637170882a612924433
Author: Leonardo Florez-Valencia <florez-l at javeriana.edu.co>
Date: Wed Mar 30 18:55:04 2016 -0500
...
-----------------------------------------------------------------------
Summary of changes:
CMakeLists.txt | 30 +-
lib/CMakeLists.txt | 71 ++--
lib/fpa/Base/Algorithm.h | 14 +-
lib/fpa/Base/Algorithm.hxx | 53 +--
lib/fpa/Base/Dijkstra.h | 45 ++-
lib/fpa/Base/Dijkstra.hxx | 89 ++++-
.../Base/ExtractBranchesFromMinimumSpanningTree.h | 76 -----
.../ExtractBranchesFromMinimumSpanningTree.hxx | 140 --------
...dPointsAndBifurcationsFromMinimumSpanningTree.h | 84 +++++
...ointsAndBifurcationsFromMinimumSpanningTree.hxx | 206 ++++++++++++
lib/fpa/Base/ExtractPathFromMinimumSpanningTree.h | 70 ++++
.../Base/ExtractPathFromMinimumSpanningTree.hxx | 69 ++++
lib/fpa/Base/FastMarching.h | 2 +
lib/fpa/Base/Functors/InvertCostFunction.h | 22 +-
lib/fpa/Base/IncrementalRegionGrow.h | 2 +
lib/fpa/Base/MatrixValuesContainer.h | 80 -----
lib/fpa/Base/MinimumSpanningTree.h | 84 ++---
lib/fpa/Base/MinimumSpanningTree.hxx | 186 +++++------
lib/fpa/Base/RegionGrow.h | 2 +
lib/fpa/Base/RegionGrowWithMultipleCriteria.h | 2 +
lib/fpa/Base/UniqueValuesContainer.h | 74 -----
lib/fpa/Base/VectorValuesContainer.h | 66 ----
lib/fpa/Common.h | 4 +-
lib/fpa/IO/MatrixValuesContainerReader.h | 63 ----
lib/fpa/IO/MatrixValuesContainerReader.hxx | 103 ------
lib/fpa/IO/MatrixValuesContainerWriter.h | 61 ----
lib/fpa/IO/MatrixValuesContainerWriter.hxx | 112 -------
lib/fpa/IO/MinimumSpanningTreeReader.h | 9 +-
lib/fpa/IO/MinimumSpanningTreeReader.hxx | 183 +++++++----
lib/fpa/IO/MinimumSpanningTreeWriter.h | 12 +-
lib/fpa/IO/MinimumSpanningTreeWriter.hxx | 169 +++++++---
lib/fpa/IO/UniqueValuesContainerReader.h | 60 ----
lib/fpa/IO/UniqueValuesContainerReader.hxx | 82 -----
lib/fpa/IO/UniqueValuesContainerWriter.h | 61 ----
lib/fpa/IO/UniqueValuesContainerWriter.hxx | 105 ------
lib/fpa/Image/Algorithm.h | 14 +-
lib/fpa/Image/Algorithm.hxx | 11 +-
lib/fpa/Image/Dijkstra.h | 24 +-
lib/fpa/Image/Dijkstra.hxx | 9 +
lib/fpa/Image/DijkstraWithEndPointDetection.h | 2 +
...dPointsAndBifurcationsFromMinimumSpanningTree.h | 105 ++++++
...ointsAndBifurcationsFromMinimumSpanningTree.hxx | 203 ++++++++++++
.../Functors/GaussianModelEstimatorFunction.h | 2 +
lib/fpa/Image/IncrementalRegionGrow.h | 2 +
lib/fpa/Image/MinimumSpanningTree.h | 85 +++++
lib/fpa/Image/MinimumSpanningTree.hxx | 151 +++++++++
lib/fpa/Image/RegionGrow.h | 2 +
lib/fpa/Image/RegionGrowWithMultipleThresholds.h | 2 +
lib/fpa/VTK/Image2DObserver.h | 2 +
lib/fpa/VTK/Image3DObserver.h | 2 +
lib/fpa/VTK/ImageMPR.cxx | 358 ---------------------
lib/fpa/VTK/ImageMPR.h | 95 ------
lib/fpa/VTK/PointPathToPolyDataFilter.h | 63 ----
lib/fpa/VTK/PointPathToPolyDataFilter.hxx | 149 ---------
lib/fpa/VTK/SeedWidgetCorrector.cxx | 79 -----
lib/fpa/VTK/SeedWidgetCorrector.h | 44 ---
lib/fpa/VTK/UniqueVerticesToPolyDataFilter.h | 67 ----
lib/fpa/VTK/UniqueVerticesToPolyDataFilter.hxx | 186 -----------
.../AllPixelsImageGrowFunctionSource.cxx | 54 ----
lib/fpaPlugins/AllPixelsImageGrowFunctionSource.h | 48 ---
lib/fpaPlugins/BaseImageFilter.cxx | 30 --
lib/fpaPlugins/BaseImageFilter.h | 59 ----
lib/fpaPlugins/CMakeLists.txt | 87 -----
.../ExtractBranchesFromMinimumSpanningTree.cxx | 75 -----
.../ExtractBranchesFromMinimumSpanningTree.h | 50 ---
lib/fpaPlugins/GrowFunction.cxx | 23 --
lib/fpaPlugins/GrowFunction.h | 47 ---
lib/fpaPlugins/GrowFunction.hxx | 8 -
lib/fpaPlugins/ImageDijkstra.cxx | 64 ----
lib/fpaPlugins/ImageRegionGrow.cxx | 77 -----
lib/fpaPlugins/MinimumSpanningTree.cxx | 23 --
lib/fpaPlugins/MinimumSpanningTree.hxx | 8 -
lib/fpaPlugins/MinimumSpanningTreeToMesh.cxx | 128 --------
lib/fpaPlugins/MinimumSpanningTreeToMesh.h | 48 ---
.../ThresholdImageGrowFunctionSource.cxx | 63 ----
lib/fpaPlugins/ThresholdImageGrowFunctionSource.h | 48 ---
plugins/CMakeLists.txt | 5 +
plugins/fpa/BaseImageFilter.cxx | 48 +++
plugins/fpa/BaseImageFilter.h | 68 ++++
.../fpaPlugins => plugins/fpa}/BaseImageFilter.hxx | 84 ++---
plugins/fpa/CMakeLists.txt | 103 ++++++
...ointsAndBifurcationsFromMinimumSpanningTree.cxx | 83 +++++
...dPointsAndBifurcationsFromMinimumSpanningTree.h | 50 +++
plugins/fpa/ExtractPathFromMinimumSpanningTree.cxx | 83 +++++
plugins/fpa/ExtractPathFromMinimumSpanningTree.h | 48 +++
plugins/fpa/ImageDijkstra.cxx | 77 +++++
{lib/fpaPlugins => plugins/fpa}/ImageDijkstra.h | 8 +-
plugins/fpa/ImageRegionGrow.cxx | 78 +++++
{lib/fpaPlugins => plugins/fpa}/ImageRegionGrow.h | 10 +-
plugins/fpa/InvertCostFunction.cxx | 63 ++++
plugins/fpa/InvertCostFunction.h | 44 +++
plugins/fpa/MinimumSpanningTree.cxx | 76 +++++
.../fpa}/MinimumSpanningTree.h | 27 +-
plugins/fpa/MinimumSpanningTreeReader.cxx | 75 +++++
plugins/fpa/MinimumSpanningTreeReader.h | 44 +++
plugins/fpa/MinimumSpanningTreeWriter.cxx | 67 ++++
plugins/fpa/MinimumSpanningTreeWriter.h | 44 +++
plugins/fpa/RegionGrowThresholdFunction.cxx | 64 ++++
plugins/fpa/RegionGrowThresholdFunction.h | 46 +++
99 files changed, 2836 insertions(+), 3547 deletions(-)
delete mode 100644 lib/fpa/Base/ExtractBranchesFromMinimumSpanningTree.h
delete mode 100644 lib/fpa/Base/ExtractBranchesFromMinimumSpanningTree.hxx
create mode 100644 lib/fpa/Base/ExtractEndPointsAndBifurcationsFromMinimumSpanningTree.h
create mode 100644 lib/fpa/Base/ExtractEndPointsAndBifurcationsFromMinimumSpanningTree.hxx
create mode 100644 lib/fpa/Base/ExtractPathFromMinimumSpanningTree.h
create mode 100644 lib/fpa/Base/ExtractPathFromMinimumSpanningTree.hxx
delete mode 100644 lib/fpa/Base/MatrixValuesContainer.h
delete mode 100644 lib/fpa/Base/UniqueValuesContainer.h
delete mode 100644 lib/fpa/Base/VectorValuesContainer.h
delete mode 100644 lib/fpa/IO/MatrixValuesContainerReader.h
delete mode 100644 lib/fpa/IO/MatrixValuesContainerReader.hxx
delete mode 100644 lib/fpa/IO/MatrixValuesContainerWriter.h
delete mode 100644 lib/fpa/IO/MatrixValuesContainerWriter.hxx
delete mode 100644 lib/fpa/IO/UniqueValuesContainerReader.h
delete mode 100644 lib/fpa/IO/UniqueValuesContainerReader.hxx
delete mode 100644 lib/fpa/IO/UniqueValuesContainerWriter.h
delete mode 100644 lib/fpa/IO/UniqueValuesContainerWriter.hxx
create mode 100644 lib/fpa/Image/ExtractEndPointsAndBifurcationsFromMinimumSpanningTree.h
create mode 100644 lib/fpa/Image/ExtractEndPointsAndBifurcationsFromMinimumSpanningTree.hxx
create mode 100644 lib/fpa/Image/MinimumSpanningTree.h
create mode 100644 lib/fpa/Image/MinimumSpanningTree.hxx
delete mode 100644 lib/fpa/VTK/ImageMPR.cxx
delete mode 100644 lib/fpa/VTK/ImageMPR.h
delete mode 100644 lib/fpa/VTK/PointPathToPolyDataFilter.h
delete mode 100644 lib/fpa/VTK/PointPathToPolyDataFilter.hxx
delete mode 100644 lib/fpa/VTK/SeedWidgetCorrector.cxx
delete mode 100644 lib/fpa/VTK/SeedWidgetCorrector.h
delete mode 100644 lib/fpa/VTK/UniqueVerticesToPolyDataFilter.h
delete mode 100644 lib/fpa/VTK/UniqueVerticesToPolyDataFilter.hxx
delete mode 100644 lib/fpaPlugins/AllPixelsImageGrowFunctionSource.cxx
delete mode 100644 lib/fpaPlugins/AllPixelsImageGrowFunctionSource.h
delete mode 100644 lib/fpaPlugins/BaseImageFilter.cxx
delete mode 100644 lib/fpaPlugins/BaseImageFilter.h
delete mode 100644 lib/fpaPlugins/CMakeLists.txt
delete mode 100644 lib/fpaPlugins/ExtractBranchesFromMinimumSpanningTree.cxx
delete mode 100644 lib/fpaPlugins/ExtractBranchesFromMinimumSpanningTree.h
delete mode 100644 lib/fpaPlugins/GrowFunction.cxx
delete mode 100644 lib/fpaPlugins/GrowFunction.h
delete mode 100644 lib/fpaPlugins/GrowFunction.hxx
delete mode 100644 lib/fpaPlugins/ImageDijkstra.cxx
delete mode 100644 lib/fpaPlugins/ImageRegionGrow.cxx
delete mode 100644 lib/fpaPlugins/MinimumSpanningTree.cxx
delete mode 100644 lib/fpaPlugins/MinimumSpanningTree.hxx
delete mode 100644 lib/fpaPlugins/MinimumSpanningTreeToMesh.cxx
delete mode 100644 lib/fpaPlugins/MinimumSpanningTreeToMesh.h
delete mode 100644 lib/fpaPlugins/ThresholdImageGrowFunctionSource.cxx
delete mode 100644 lib/fpaPlugins/ThresholdImageGrowFunctionSource.h
create mode 100644 plugins/CMakeLists.txt
create mode 100644 plugins/fpa/BaseImageFilter.cxx
create mode 100644 plugins/fpa/BaseImageFilter.h
rename {lib/fpaPlugins => plugins/fpa}/BaseImageFilter.hxx (59%)
create mode 100644 plugins/fpa/CMakeLists.txt
create mode 100644 plugins/fpa/ExtractEndPointsAndBifurcationsFromMinimumSpanningTree.cxx
create mode 100644 plugins/fpa/ExtractEndPointsAndBifurcationsFromMinimumSpanningTree.h
create mode 100644 plugins/fpa/ExtractPathFromMinimumSpanningTree.cxx
create mode 100644 plugins/fpa/ExtractPathFromMinimumSpanningTree.h
create mode 100644 plugins/fpa/ImageDijkstra.cxx
rename {lib/fpaPlugins => plugins/fpa}/ImageDijkstra.h (84%)
create mode 100644 plugins/fpa/ImageRegionGrow.cxx
rename {lib/fpaPlugins => plugins/fpa}/ImageRegionGrow.h (79%)
create mode 100644 plugins/fpa/InvertCostFunction.cxx
create mode 100644 plugins/fpa/InvertCostFunction.h
create mode 100644 plugins/fpa/MinimumSpanningTree.cxx
rename {lib/fpaPlugins => plugins/fpa}/MinimumSpanningTree.h (52%)
create mode 100644 plugins/fpa/MinimumSpanningTreeReader.cxx
create mode 100644 plugins/fpa/MinimumSpanningTreeReader.h
create mode 100644 plugins/fpa/MinimumSpanningTreeWriter.cxx
create mode 100644 plugins/fpa/MinimumSpanningTreeWriter.h
create mode 100644 plugins/fpa/RegionGrowThresholdFunction.cxx
create mode 100644 plugins/fpa/RegionGrowThresholdFunction.h
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Generic implementation of front propagation algorithms with some extra features
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