<div dir="ltr"><div><div>Yes, it is what I understood. As I receive my DICOM files globally, I wondered if I could load them directly in VV without preprocessing.<br><br></div>Thank you<br></div>-A.<br><br></div><div class="gmail_extra"><br><div class="gmail_quote">On Thu, Apr 7, 2016 at 12:00 PM, <span dir="ltr"><<a href="mailto:vv-request@creatis.insa-lyon.fr" target="_blank">vv-request@creatis.insa-lyon.fr</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Send vv mailing list submissions to<br>
<a href="mailto:vv@creatis.insa-lyon.fr">vv@creatis.insa-lyon.fr</a><br>
<br>
To subscribe or unsubscribe via the World Wide Web, visit<br>
<a href="http://www.creatis.insa-lyon.fr/mailman/listinfo/vv" rel="noreferrer" target="_blank">http://www.creatis.insa-lyon.fr/mailman/listinfo/vv</a><br>
or, via email, send a message with subject or body 'help' to<br>
<a href="mailto:vv-request@creatis.insa-lyon.fr">vv-request@creatis.insa-lyon.fr</a><br>
<br>
You can reach the person managing the list at<br>
<a href="mailto:vv-owner@creatis.insa-lyon.fr">vv-owner@creatis.insa-lyon.fr</a><br>
<br>
When replying, please edit your Subject line so it is more specific<br>
than "Re: Contents of vv digest..."<br>
<br>
<br>
Today's Topics:<br>
<br>
1. Re: DICOM 3D+t (Mohammad VARASTEH ANVAR)<br>
2. Problems building VV : need help ! (Matthieu Dondey)<br>
3. Re: Problems building vv : need help (Matthieu Dondey)<br>
<br>
<br>
----------------------------------------------------------------------<br>
<br>
Message: 1<br>
Date: Wed, 6 Apr 2016 09:37:40 +0200<br>
From: "Mohammad VARASTEH ANVAR" <<a href="mailto:varasteh@to.infn.it">varasteh@to.infn.it</a>><br>
To: <a href="mailto:vv@creatis.insa-lyon.fr">vv@creatis.insa-lyon.fr</a><br>
Subject: Re: [Vv] DICOM 3D+t<br>
Message-ID:<br>
<<a href="mailto:8b302e9f2e8454f9f7baadbed0511aab.squirrel@webmail.to.infn.it">8b302e9f2e8454f9f7baadbed0511aab.squirrel@webmail.to.infn.it</a>><br>
Content-Type: text/plain;charset=utf-8<br>
<br>
Dear Aur?lien,<br>
<br>
If I understood correctly you want to load 10 phases of a 4D-CT as 3D+t.<br>
<br>
If so, first you should change the DICOM series of each phase to a single<br>
*.nii or *.mhd. Then you can load the (*.nii or *.mhd)s via "merge several<br>
nD images into a single (n+1)D image.<br>
<br>
This is the method which I use to merge the 4D-CT volumes together and<br>
play as a 3D+t.<br>
<br>
Regards,<br>
varasteh<br>
_______________________________________________<br>
<br>
Dear all,<br>
<br>
I'm totally new to VV.<br>
I try to load a (3D+t) DICOM serie with VV (512x512 x 91 slices x 10<br>
phases). I obtain a 3D image only, with one dimension too long (910<br>
slices), see attached.<br>
Can anyone give me an advice to manage this kind of serie?<br>
Note that the Dicom Series Selector sees only 1 image (with 910 files).<br>
<br>
Regards<br>
Aur?lien<br>
_______________________________________________<br>
vv mailing list<br>
<a href="mailto:vv@creatis.insa-lyon.fr">vv@creatis.insa-lyon.fr</a><br>
<a href="http://www.creatis.insa-lyon.fr/mailman/listinfo/vv" rel="noreferrer" target="_blank">http://www.creatis.insa-lyon.fr/mailman/listinfo/vv</a><br>
<br>
<br>
<br>
<br>
------------------------------<br>
<br>
Message: 2<br>
Date: Wed, 6 Apr 2016 11:34:42 +0200<br>
From: Matthieu Dondey <<a href="mailto:m.dondey@gmail.com">m.dondey@gmail.com</a>><br>
To: <a href="mailto:vv@creatis.insa-lyon.fr">vv@creatis.insa-lyon.fr</a><br>
Subject: [Vv] Problems building VV : need help !<br>
Message-ID:<br>
<<a href="mailto:CAGue2fBkT-4A6JHq0uU_3epyH2Z6c_77e3%2ByNLfpcczhy1G0cA@mail.gmail.com">CAGue2fBkT-4A6JHq0uU_3epyH2Z6c_77e3+yNLfpcczhy1G0cA@mail.gmail.com</a>><br>
Content-Type: text/plain; charset="utf-8"<br>
<br>
I can't manage to build VV correctly and it seems that I've tried all what<br>
my newbie abilities in software building could allow.<br>
<br>
<br>
I've tried building step by step following what was recommended on the<br>
site, building from source.<br>
<br>
<br>
In the end, VTK and ITK build okay but VV crashes during the building<br>
process.<br>
<br>
<br>
Here are the errors that I have while building VV (along with many other<br>
warnings) :<br>
<br>
<br>
make[2]: ***<br>
[tools/CMakeFiles/clitkCropImageLib.dir/clitkCropImageGenericFilter.cxx.o]<br>
Erreur 1<br>
<br>
make[1]: *** [tools/CMakeFiles/clitkCropImageLib.dir/all] Erreur 2<br>
<br>
<br>
/home/myplace/mesProgs/vv/vv-src/common/clitkMemoryUsage.cxx:48:38: error:<br>
cannot convert ?int*? to ?size_t* {aka long unsigned int*}? for argument<br>
?1? to ?sg_process_stats* sg_get_process_stats(size_t*)? make[2]: ***<br>
[common/CMakeFiles/clitkCommon.dir/clitkMemoryUsage.cxx.o] Erreur 1<br>
<br>
<br>
<br>
make[1]: *** [common/CMakeFiles/clitkCommon.dir/all] Erreur 2<br>
<br>
<br>
and it stops at around 28 % with<br>
<br>
<br>
Linking CXX static library ../lib/libclitkAffineRegistrationLib.a<br>
<br>
[ 28%] Built target clitkAffineRegistrationLib<br>
<br>
make: *** [all] Erreur 2<br>
<br>
<br>
Here are the versions of the packages that I use :<br>
<br>
- cmake : 2.8.12.2<br>
<br>
- gcc and g++ : I was using by default the 4.8 version but I had to use<br>
the 4.6 in order to build ITK<br>
<br>
- qt : 4<br>
<br>
- VTK : 5.10<br>
<br>
- ITK : 3.2<br>
<br>
- VV : October 2012 release<br>
<br>
<br>
<br>
VTK and ITK are installed locally in my /usr/local folder and from what I'm<br>
guessing it seems that the VV build has trouble finding all the ITK files<br>
needed to build correctly.<br>
<br>
<br>
Maybe there's a linking part that I should have done, but I have no idea<br>
how to do it ? maybe something I should add in my .bashrc file ? I dunno :'(<br>
<br>
<br>
If anyone could help, it would be greatly appreciated.<br>
<br>
<br>
Cheers,<br>
<br>
<br>
Matthieu<br>
-------------- next part --------------<br>
An HTML attachment was scrubbed...<br>
URL: <<a href="http://www.creatis.insa-lyon.fr/pipermail/vv/attachments/20160406/d52b904b/attachment-0001.html" rel="noreferrer" target="_blank">http://www.creatis.insa-lyon.fr/pipermail/vv/attachments/20160406/d52b904b/attachment-0001.html</a>><br>
<br>
------------------------------<br>
<br>
Message: 3<br>
Date: Wed, 6 Apr 2016 11:42:08 +0200<br>
From: Matthieu Dondey <<a href="mailto:m.dondey@gmail.com">m.dondey@gmail.com</a>><br>
To: <a href="mailto:vv@creatis.insa-lyon.fr">vv@creatis.insa-lyon.fr</a><br>
Subject: Re: [Vv] Problems building vv : need help<br>
Message-ID:<br>
<CAGue2fDbEo4yqUfZ-1i+AHq+wJ7ky7kRNKYpctv=<a href="mailto:DezJC3_zcA@mail.gmail.com">DezJC3_zcA@mail.gmail.com</a>><br>
Content-Type: text/plain; charset="utf-8"<br>
<br>
Dear VV users, sorry my mail was sent a bit too quickly without proper<br>
greetings,<br>
<br>
here it is again :)<br>
<br>
<br>
Dear VV users,<br>
<br>
?I can't manage to build VV correctly and it seems that I've tried all what<br>
my newbie abilities in software building could allow.<br>
<br>
<br>
I've tried building step by step following what was recommended on the<br>
site, building from source.<br>
<br>
<br>
In the end, VTK and ITK build okay but VV crashes during the building<br>
process.<br>
<br>
<br>
Here are the errors that I have while building VV (along with many other<br>
warnings) :<br>
<br>
<br>
make[2]: ***<br>
[tools/CMakeFiles/clitkCropImageLib.dir/clitkCropImageGenericFilter.cxx.o]<br>
Erreur 1<br>
<br>
make[1]: *** [tools/CMakeFiles/clitkCropImageLib.dir/all] Erreur 2<br>
<br>
<br>
/home/myplace/mesProgs/vv/vv-src/common/clitkMemoryUsage.cxx:48:38: error:<br>
cannot convert ?int*? to ?size_t* {aka long unsigned int*}? for argument<br>
?1? to ?sg_process_stats* sg_get_process_stats(size_t*)? make[2]: ***<br>
[common/CMakeFiles/clitkCommon.dir/clitkMemoryUsage.cxx.o] Erreur 1<br>
<br>
<br>
<br>
make[1]: *** [common/CMakeFiles/clitkCommon.dir/all] Erreur 2<br>
<br>
<br>
and it stops at around 28 % with<br>
<br>
<br>
Linking CXX static library ../lib/libclitkAffineRegistrationLib.a<br>
<br>
[ 28%] Built target clitkAffineRegistrationLib<br>
<br>
make: *** [all] Erreur 2<br>
<br>
<br>
Here are the versions of the packages that I use :<br>
<br>
- cmake : 2.8.12.2<br>
<br>
- gcc and g++ : I was using by default the 4.8 version but I had to use<br>
the 4.6 in order to build ITK<br>
<br>
- qt : 4<br>
<br>
- VTK : 5.10<br>
<br>
- ITK : 3.2<br>
<br>
- VV : October 2012 release<br>
<br>
<br>
<br>
VTK and ITK are installed locally in my /usr/local folder and from what I'm<br>
guessing it seems that the VV build has trouble finding all the ITK files<br>
needed to build correctly.<br>
<br>
<br>
Maybe there's a linking part that I should have done, but I have no idea<br>
how to do it ? maybe something I should add in my .bashrc file ? I dunno :'(<br>
<br>
<br>
If anyone could help, it would be greatly appreciated.<br>
<br>
<br>
Cheers,<br>
<br>
<br>
Matthieu<br>
-------------- next part --------------<br>
An HTML attachment was scrubbed...<br>
URL: <<a href="http://www.creatis.insa-lyon.fr/pipermail/vv/attachments/20160406/b40113b3/attachment-0001.html" rel="noreferrer" target="_blank">http://www.creatis.insa-lyon.fr/pipermail/vv/attachments/20160406/b40113b3/attachment-0001.html</a>><br>
<br>
------------------------------<br>
<br>
Subject: Digest Footer<br>
<br>
_______________________________________________<br>
vv mailing list<br>
<a href="mailto:vv@creatis.insa-lyon.fr">vv@creatis.insa-lyon.fr</a><br>
<a href="http://www.creatis.insa-lyon.fr/mailman/listinfo/vv" rel="noreferrer" target="_blank">http://www.creatis.insa-lyon.fr/mailman/listinfo/vv</a><br>
<br>
------------------------------<br>
<br>
End of vv Digest, Vol 51, Issue 2<br>
*********************************<br>
</blockquote></div><br></div>