<div dir="ltr">Hi all,<div><br></div><div>a) I got a windows computer and used the windows installer 64 bit and vv works (it was a breeze, I had to do nothing). Please, let me know how i should proceed now to get the automatic motion mask. My aim is to obtain the abdomen and lungs masked. </div>
<div><br></div><div>b)On OS-X, after tapping Homebrew, i still problems. Let me tell you what I did, I hope it helps you(me) understand (what I did wrong):<div><br></div><div><br></div><div>1) installed VTK with --qt option</div>
<div>2) brew-installed qt</div>
<div>3) git-installed ITK with all_module "on" (I used git since i dont know how to change the "configure" with brew), not with review "on" because it gives me problem (same problem, for the insighttoolkit with brew). Here is the problem with ITK:</div>
<div><br></div><div><div>[100%] Built target ITKReview</div>
<div>[100%] Built target ITKReview-all</div><div>Scanning dependencies of target itkTestDriver</div><div>[100%] Building CXX object Modules/Core/TestKernel/src/CMakeFiles/itkTestDriver.dir/itkTestDriver.cxx.o</div><div>Linking CXX executable ../../../../bin/itkTestDriver</div>
<div>ld: library not found for -lgdcmMSFF</div><div>clang: error: linker command failed with exit code 1 (use -v to see invocation)</div><div>make[2]: *** [bin/itkTestDriver] Error 1</div><div>make[1]: *** [Modules/Core/TestKernel/src/CMakeFiles/itkTestDriver.dir/all] Error 2</div>
<div>make: *** [all] Error 2</div><div><br></div><div>4) brew formula with the new vv.rb (with and without --HEAD)</div><div><br></div><div>---------------------------------</div><div><div>Sergios-MacBook-Pro:brew_vv gaudios$ brew install --HEAD ./vv.rb</div>
<div>==> Cloning git://<a href="http://git.creatis.insa-lyon.fr/clitk" target="_blank">git.creatis.insa-lyon.fr/clitk</a></div><div>Updating /Library/Caches/Homebrew/vv--git</div><div>==> cmake .. -DCMAKE_INSTALL_PREFIX=/usr/local/Cellar/vv/HEAD -DCMAKE_BUILD_TYPE=None -DCMAKE_FIND_FRAMEWORK=LAST -Wno-dev -DCMAKE_BUILD_T</div>
<div> provides a separate development package or SDK, be sure it has been</div><div> installed.</div><div><br></div><div><br></div><div>-- Configuring incomplete, errors occurred!</div><div><br></div><div>READ THIS: <a href="https://github.com/mxcl/homebrew/wiki/troubleshooting" target="_blank">https://github.com/mxcl/homebrew/wiki/troubleshooting</a></div>
<div><br></div><div>--------------------</div><div><br></div><div>Sergios-MacBook-Pro:brew_vv gaudios$ brew install ./vv.rb</div><div>==> Downloading <a href="http://www.creatis.insa-lyon.fr/rio/vv?action=AttachFile&do=get&target=vvSource-1.3.tar.gz" target="_blank">http://www.creatis.insa-lyon.fr/rio/vv?action=AttachFile&do=get&target=vvSource-1.3.tar.gz</a></div>
<div>Already downloaded: /Library/Caches/Homebrew/vv-1.3.tar.gz</div><div>==> cmake .. -DCMAKE_INSTALL_PREFIX=/usr/local/Cellar/vv/1.3 -DCMAKE_BUILD_TYPE=None -DCMAKE_FIND_FRAMEWORK=LAST -Wno-dev -DCMAKE_BUILD_TY</div>
<div>==> make</div><div>make[1]: *** Waiting for unfinished jobs....</div><div>make[1]: *** [common/CMakeFiles/clitkCommon.dir/all] Error 2</div><div>Linking CXX static library ../lib/libclitkResampleImageLib.a</div><div>
[ 40%] Built target clitkResampleImageLib</div><div>make: *** [all] Error 2</div><div><br></div><div>READ THIS: <a href="https://github.com/mxcl/homebrew/wiki/troubleshooting" target="_blank">https://github.com/mxcl/homebrew/wiki/troubleshooting</a></div>
</div><div><br></div><div><br></div><div style>THANKS A LOT, for the help !!!</div></div></div><div style><br></div><div style>Sergio</div></div><div class="gmail_extra"><br><br><div class="gmail_quote">On Tue, Jun 25, 2013 at 11:31 PM, David Sarrut <span dir="ltr"><<a href="mailto:David.Sarrut@creatis.insa-lyon.fr" target="_blank">David.Sarrut@creatis.insa-lyon.fr</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">Hello Sergio, <div><br></div><div>cou you please give a try to : </div><div>1. brew tap homebrew/science</div>
<div>(because itk is now in another repository)</div><div><br></div><div>2. brew install --HEAD ./vv.rb</div>
<div>(with the vv.rb attached to this email)</div><div><br></div><div>Warning : in this brew version, it uses itk with gdcm included, so some new features (reading Dicom-RT Struct from dicom files) will not work properly. To make it work, we need to separately install gdcm from git repo, then say to itk it must use gdcm, then compile vv ...</div>
<div><br></div><div>let us know, </div><div>David</div><div><br></div><div class="gmail_extra"><br><br><div class="gmail_quote">On Wed, Jun 26, 2013 at 8:13 AM, Simon Rit <span dir="ltr"><<a href="mailto:simon.rit@creatis.insa-lyon.fr" target="_blank">simon.rit@creatis.insa-lyon.fr</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex">Une idée ?<div><div class="h5"><br>
<br>
<br>
---------- Forwarded message ----------<br>
From: Sergio Gaudio <<a href="mailto:gaudios@gmail.com" target="_blank">gaudios@gmail.com</a>><br>
Date: Tue, Jun 25, 2013 at 10:15 PM<br>
Subject: brew<br>
To: Rit Simon <<a href="mailto:simon.rit@creatis.insa-lyon.fr" target="_blank">simon.rit@creatis.insa-lyon.fr</a>><br>
<br>
<br>
Hi Simon, the reason why I was tying the superbuild is because I get<br>
the errors attached in the file with brew.<br>
As a matter of fact, I have still problems when I do the step by step<br>
indicated in the page you linked, unfortunately.<br>
I thought maybe sending you the errors would help since you have a Mac too..<br>
<br>
thanks,<br>
<br>
sergio<br>
<br>
--<br>
-------------------------------------------------------------------------<br>
Sergio Gaudio, PhD<br>
UCLA, David Geffen School of Medicine,<br>
Radiation Oncology Dept,<br>
email: <a href="mailto:sgaudio@mednet.ucla.edu" target="_blank">sgaudio@mednet.ucla.edu</a><br>
</div></div></blockquote></div><span class="HOEnZb"><font color="#888888"><br><br clear="all"><div><br></div>-- <br><div dir="ltr">David Sarrut, Phd<br>Chargé de recherche CNRS<br>CREATIS, UMR CNRS 5220, Inserm U 1044<div>
Centre de lutte contre le cancer Léon Bérard<br>28 rue Laënnec, 69373 Lyon cedex 08<br>
Tel : 04 78 78 51 51 / 06 74 72 05 42<br><a href="http://www.creatis.insa-lyon.fr/~dsarrut" target="_blank">http://www.creatis.insa-lyon.fr/~dsarrut</a><br>_________________________________</div><div> "2 + 2 = 5, for extremely large values of 2"<br>
_________________________________</div></div>
</font></span></div></div>
</blockquote></div><br><br clear="all"><div><br></div>-- <br><div>-------------------------------------------------------------------------<br>Sergio Gaudio, PhD<br></div><div>UCLA, David Geffen School of Medicine,</div>
<div>Radiation Oncology Dept,</div><div>email: <a href="mailto:sergio.gaudio@enea.it" target="_blank">sgaudio@mednet.ucla</a>.edu</div>
</div>