Apologies,<div><br></div><div>I meant to have added the line:</div><div><br></div><div>-DCLITK_BUILD_VV:BOOL=<font color="#ff0000">OFF</font><br><br>Instead of the option being ON in my CMakelists.text file.</div><div><br>
</div><div>Cheers,</div><div><br></div><div>Bilal<br><br><div class="gmail_quote">On 26 February 2013 23:33, Bilal Tahir <span dir="ltr"><<a href="mailto:b.tahir@sheffield.ac.uk" target="_blank">b.tahir@sheffield.ac.uk</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Dear Simon,<div><br></div><div>Thanks for your email. Yes, although it would be nice to have the latest version of the VV gui, I could just use the Oct 2012 version for now but I do need to use CLITK.</div>
<div><br></div><div>
I have edited the CMakeLists.txt file (attached) by deleting the QT section and adding the following lines to VV section:</div><div><br></div><div><div> -DCLITK_BUILD_VV:BOOL=ON</div><div> -DCLITK_BUILD_REGISTRATION:BOOL=ON </div>
<div> -DCLITK_BUILD_SEGMENTATION:BOOL=ON </div><div> -DCLITK_BUILD_TOOLS:BOOL=ON </div>
<div> -DCLITK_EXPERIMENTAL:BOOL=ON</div></div><div><br></div><div>Can you confirm that this is all that is needed?</div><div><br></div><div>Also once it has compiled, do I add the paths in the .bashrc to refer to 'Build' folder or will another folder show up if it is succesful?</div>
<div><br></div><div>I'm not that familiar with Linux so I appreciate your assistance.</div><div><br></div><div>Best wishes,</div><div><br></div><div>Bilal </div><div class="HOEnZb"><div class="h5"><div><br><div class="gmail_quote">
On 24 February 2013 11:09, Simon Rit <span dir="ltr"><<a href="mailto:simon.rit@creatis.insa-lyon.fr" target="_blank">simon.rit@creatis.insa-lyon.fr</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Dear Bilal,<br>We are considering this for VV first but we will not support this for clitk tools. We are happy to provide clitk tools but users must try to solve their compilation issues.<br>
By the way, compilation of clitk tools, if this is what you are interested in, should not require qt if you disable VV compilation (CLITK_BUILD_VV:BOOL=OFF).<span><font color="#888888"><br>
Simon<br><br></font></span><div class="gmail_quote"><div><div>On Sat, Feb 23, 2013 at 12:13 AM, Bilal Tahir <span dir="ltr"><<a href="mailto:b.tahir@sheffield.ac.uk" target="_blank">b.tahir@sheffield.ac.uk</a>></span> wrote:<br>
</div></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div>
Can I make a request that the latest version of VV including CLITK with all options set to ON be made available as a precompiled .sh binary file? Slicer3D <a href="http://download.slicer.org/" target="_blank">http://download.slicer.org/</a> allows for a nightly download of the binary version of the latest version.<div>
<br></div><div>This is due to my case where I have experienced many errors in trying to install the relevant programs until I finally get to install CLITK whereas the Oct 2012 precomiled binary .sh file worked fine on linux for me. However, CLITK was not included in that release.</div>
<div><br></div><div>Best wishes,</div><div><br></div><div>Bilal </div><div><div><div><br><div class="gmail_quote">On 22 February 2013 22:58, Bilal Tahir <span dir="ltr"><<a href="mailto:b.tahir@sheffield.ac.uk" target="_blank">b.tahir@sheffield.ac.uk</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Dear All,<div><br></div><div>I am trying to install CLITK by adding the relevant =ON options on the CMakeLists.txt file (attached edited version in this email) found in the following link <a href="https://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=blob;f=superbuild/CMakeLists.txt" target="_blank">https://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=blob;f=superbuild/CMakeLists.txt</a></div>
<div><br></div><div>I then run the following two commands:</div><div><pre style="border:1pt solid rgb(174,189,204);background-color:rgb(243,245,247);padding:5pt;font-family:courier,monospace;white-space:pre-wrap;word-wrap:break-word;font-size:16px">
cmake superbuild-file-directory
<span></span>make</pre></div><div><div>However, after running 'make' it started installing the programs (ITK, QT and VTK) one after the other for several hours until it reached 60% of the last program 'VV' where it gave the following errors and stopped:</div>
<div><br></div><div><div>collect2: ld returned 1 exit status</div><div>make[5]: *** [bin/vv] Error 1</div><div>make[4]: *** [vv/CMakeFiles/vv.dir/all] Error 2</div><div>make[3]: *** [all] Error 2</div><div>make[2]: *** [Stamp/VV/VV-build] Error 2</div>
<div>make[1]: *** [CMakeFiles/VV.dir/all] Error 2</div><div>make: *** [all] Error 2</div><br><div class="gmail_quote">I've copied and posted some of the last few lines up till the point that the error came.</div><div class="gmail_quote">
<br></div><div class="gmail_quote">The 'make' command created several folders in my home folder (/home/md1bat/) including 'Source' and 'Build'. It appears that ITK, QT and VTK (not VV) completed as you can see from the /home/md1bat/CMakeFiles/ folder.</div>
<div class="gmail_quote"><br></div><div class="gmail_quote"><img alt="Inline images 1"><br>
</div><div class="gmail_quote"><br></div><div class="gmail_quote">Within the 'Build' folder, each of the four programs, ITK, VTK, QT and VV have at least a bin and/or lib folder. This is not the case in the 'Source' folder. Therefore, I have added the paths of the respective bin and lib folders from the 'Build' folder (not Source) to my .bashrc file (attached in this email). However, none of the programs (including the completed ITK, QT and VTK) seem to work even if I want to check which version I have installed using the command e.g itk --version. I have now deleted the precompiled 'VV' Oct 2012 version which used to work with the command vv. However, the command vv now gives the output 'command not found'.</div>
<div class="gmail_quote"><br></div><div class="gmail_quote">I'm not sure if I have done the export path correctly on my .bashrc as I have referenced it to the 'Build' folder and not the 'Source' folder as there was no bin or lib folders within that. Furthermore, I have no idea why the errors occurred.</div>
<div class="gmail_quote"><br></div><div class="gmail_quote">Please let me know if you have any suggestions.</div><div class="gmail_quote"><br></div><div class="gmail_quote">Best wishes,</div><div class="gmail_quote"><br>
</div>
<div class="gmail_quote">Bilal Tahir,</div></div><div>James Morrison Researcher in Radiotherapy Imaging,</div><div>University of Sheffield/Weston Park Cancer Hospital</div>
</div>
</blockquote></div><br><br clear="all"><div><br></div></div></div>-- <br><div>Bilal Tahir,<div>James Morrison Researcher in Radiotherapy Imaging</div>
</div></div>
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<br></blockquote></div><br><br clear="all"><div><br></div>-- <br>Bilal Tahir,<div>James Morrison Researcher in Radiotherapy Imaging</div>
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</div></div></blockquote></div><br><br clear="all"><div><br></div>-- <br>Bilal Tahir,<div>James Morrison Researcher in Radiotherapy Imaging</div>
</div>